Jamaican Lion
RSP 12917
Grower: kevin McKernan
General Information
- Sample Name
- JL-Fem-Seed-Root
- Accession Date
- September 14, 2023
- Reported Plant Sex
- Female
- Report Type
- Whole-Genome Sequencing
- Microbiome
- Krona Plot
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.154G>A | p.Val52Ile | missense variant | moderate | contig83 | 1803215 | C/T |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
FAD2-2 | c.23G>A | p.Ser8Asn | missense variant | moderate | contig83 | 1803346 | C/T |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
TFL1 | c.47_48dupAT | p.Val17fs | frameshift variant | high | contig1636 | 521258 | C/CAT | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>T | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.013 JL 3rd Gen Mother (RSP11197)
- 0.014 JL yellow (RSP11075)
- 0.014 JL 3rd Gen Mother (RSP11214)
- 0.043 Jamaican Lion (RSP12916)
- 0.065 Jamaican Lion (RSP12915)
- 0.151 JL 4th Gen 1 (RSP11193)
- 0.175 JL 4th Gen 5 (RSP11199)
- 0.177 JL 4th Gen 2 (RSP11194)
- 0.184 JL 4th Gen 6 (RSP11200)
- 0.185 JL 4th Gen 4 (RSP11198)
- 0.186 JL 4th Gen 3 (RSP11195)
- 0.212 Original Jamaican Lions (RSP11127)
- 0.228 JL x NSPM1 4 (RSP11482)
- 0.236 JL X NSPM1 12 (RSP11472)
- 0.247 JL 4th Gen 7 (RSP11153)
- 0.255 Jamaican Lion (RSP12919)
- 0.256 Jamaican Lion (RSP12920)
- 0.257 Jamaican Lion (RSP12918)
- 0.268 JL X NSPM1 8 (RSP11470)
- 0.273 JL Tent 4 (RSP11491)
Nearest genetic relatives (Base Tree)
- 0.015 JL yellow (RSP11075)
- 0.306 Blue Dream (RSP11033)
- 0.307 RKM-2018-006 (RSP11097)
- 0.309 Sour Raspberry (RSP10551)
- 0.312 UP Sunrise (RSP10989)
- 0.314 CST (RSP11002)
- 0.316 Italian Kiss (RSP11034)
- 0.318 RKM-2018-023 (RSP11115)
- 0.329 RKM-2018-027 (RSP11119)
- 0.341 Kimbo Slice (RSP10997)
- 0.343 Queen Jesus (RSP10105)
- 0.347 Skunk 18 (RSP11038)
- 0.348 Golden Goat 2 (RSP10991)
- 0.353 Gold Cracker (RSP11048)
- 0.356 Tygra (RSP10667)
- 0.358 Hermaphrodite Research Sample1 (RSP11049)
- 0.360 Durban Poison (RSP11014)
- 0.361 Blueberry Cheesecake (RSP10680)
- 0.362 RKM-2018-009 (RSP11100)
- 0.362 Black Beauty (RSP11035)
Most genetically distant strains (All Samples)
- 0.551 Purple Urkle (RSP12890)
- 0.533 GMO x Poison Momosa (RSP12626)
- 0.526 JL Cross 14 (RSP11515)
- 0.516 BagSeed (RSP12627)
- 0.516 JL Cross 6 (RSP11507)
- 0.510 Red Eye OG (RSP11190)
- 0.507 CS (RSP11208)
- 0.504 80E (RSP11213)
- 0.504 Fatso (RSP11741)
- 0.504 Cherry Blossom (RSP11308)
- 0.504 Cherry Blossom (RSP11335)
- 0.503 Deadhead OG (RSP11463)
- 0.501 Feral (RSP11205)
- 0.500 Cherry Blossom (RSP11333)
- 0.497 CHEM4 (RSP12090)
- 0.495 80E (RSP11211)
- 0.494 80E (RSP11212)
- 0.492 Wedding Cake x MAC (RSP11464)
- 0.491 Cherry Blossom (RSP11311)
- 0.486 Absolute OG (RSP11455)
Most genetically distant strains (Base Tree)
- 0.474 Cbot-2019-005 (RSP11133)
- 0.448 RKM-2018-002 (RSP11093)
- 0.443 Skywalker OG (RSP10837)
- 0.440 Cherry (RSP11142)
- 0.439 Kush Hemp E1 (RSP11128)
- 0.424 RKM-2018-026 (RSP11118)
- 0.423 Cherry (RSP11143)
- 0.421 RKM-2018-034 (RSP11126)
- 0.421 RKM-2018-019 (RSP11111)
- 0.407 Santhica27 (RSP11047)
- 0.406 USO 31 (RSP10981)
- 0.400 Futura 75 (RSP10664)
- 0.399 RKM-2018-022 (RSP11114)
- 0.398 RKM-2018-032 (RSP11124)
- 0.397 Monoica (RSP10241)
- 0.395 Pie Hoe (RSP11073)
- 0.394 Fedora 17 (RSP10661)
- 0.393 The Gift (RSP10988)
- 0.392 Carmagnola (RSP11037)
- 0.392 Feral (RSP10890)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 96
- Concordance:
- 54
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 1
- Concordance:
- 1
Blockchain Registration Information
- Transaction ID
-
6cbca979e9c46f02
02dd75f0a3cfd67f 1704290fb881c289 1defb944bec93aff - Stamping Certificate
- Download PDF (39.5 KB)
- SHASUM Hash
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47c1ebc9e511bf55
211700349d65e66c cbd5481676bb86d3 06d221c63590c4d4