Styrofoam Cup x Orange Juice #1
RSP 12980
Grower: Team Elite Genetics
General Information
- Sample Name
- S X OJ #1 - 20231207
- Accession Date
- December 6, 2023
- Reported Plant Sex
- Female
- Report Type
- Whole-Genome Sequencing
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-2a | c.781T>A | p.Leu261Ile | missense variant | moderate | contig700 | 1944609 | A/T | |
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2b | c.67A>T | p.Ile23Phe | missense variant | moderate | contig700 | 1951815 | T/A | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.338G>A | p.Gly113Glu | missense variant | moderate | contig700 | 2721335 | C/T |
|
PKSG-4b |
c.235_239dup |
p.Phe80fs | frameshift variant | high | contig700 | 2724195 | G/GAATCT |
|
PKSG-4b | c.134G>A | p.Arg45Gln | missense variant | moderate | contig700 | 2724301 | C/T |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.190C>T | p.His64Tyr | missense variant | moderate | contig83 | 1803179 | G/A |
|
FAD2-2 | c.164A>G | p.His55Arg | missense variant | moderate | contig83 | 1803205 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.64G>T | p.Ala22Ser | missense variant | moderate | contig83 | 1803305 | C/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.732A>T | p.Leu244Phe | missense variant | moderate | contig97 | 242438 | A/T |
|
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
aPT4 | c.35A>C | p.Gln12Pro | missense variant | moderate | contig121 | 2828691 | A/C |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 | c.884C>T | p.Thr295Ile | missense variant | moderate | contig81 | 209846 | C/T |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1177G>A | p.Asp393Asn | missense variant | moderate | contig81 | 210139 | G/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1318A>G | p.Asn440Asp | missense variant | moderate | contig1460 | 1192080 | T/C | |
PIE1-2 | c.1294G>A | p.Asp432Asn | missense variant | moderate | contig1460 | 1192104 | C/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1279G>A | p.Val427Ile | missense variant | moderate | contig1460 | 1192119 | C/T | |
PIE1-2 | c.1015G>A | p.Asp339Asn | missense variant | moderate | contig1460 | 1192383 | C/T | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.961C>T | p.Arg321Trp | missense variant | moderate | contig1460 | 1192437 | G/A | |
FT |
c.29_43dupAT |
p.Asn10_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
PIE1-1 | c.1120G>A | p.Asp374Asn | missense variant | moderate | contig1225 | 2281380 | G/A |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1249G>T | p.Val417Leu | missense variant | moderate | contig1225 | 2281509 | G/T | |
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.679G>A | p.Glu227Lys | missense variant | moderate | contig2282 | 549671 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 |
c.1850_1852d |
p.Met617dup | disruptive inframe insertion | moderate | contig93 | 3339945 | A/AGAT |
|
Nearest genetic relatives (All Samples)
- 0.137 Styrofoam Cup x Orange Juice 5 (RSP12974)
- 0.157 Pearadise x Fuzzy Melon 3 (RSP12985)
- 0.160 Garlic (RSP11341)
- 0.184 GMO (RSP12091)
- 0.193 Styrofoam Cup x Cuban Linx 6 (RSP12982)
- 0.197 Pearadise x Orange Juice 4 (RSP12975)
- 0.204 Styrofoam Cup x Cuban Linx 1 (RSP12984)
- 0.208 Styrofoam Cup x Cuban Linx 4 (RSP12970)
- 0.209 GMO x [REDACTED] 43 (RSP11976)
- 0.213 Pearadise x Orange Juice 2 (RSP12981)
- 0.213 El Presidente (RSP12807)
- 0.220 Styrofoam Cup x Pineapple Pez Melonade 5 (RSP12979)
- 0.222 Mother s Milk No 31 (RSP11623)
- 0.224 Styrofoam Cup x Diesel Truck OG 16 (RSP12972)
- 0.224 GMO x Garlic Breath (RSP12507)
- 0.228 Peanut Butter Breath (RSP11640)
- 0.229 Rugburn OG (RSP11353)
- 0.230 NSPM1 (RSP11362)
- 0.231 Star Dawg (RSP11352)
- 0.232 NSPM x NSPM (RSP11487)
Nearest genetic relatives (Base Tree)
- 0.280 RKM-2018-004 (RSP11096)
- 0.282 Skywalker OG (RSP10837)
- 0.289 RKM-2018-026 (RSP11118)
- 0.293 RKM-2018-002 (RSP11093)
- 0.295 Pie Hoe (RSP11073)
- 0.295 Blueberry Cheesecake (RSP10680)
- 0.296 RKM-2018-009 (RSP11100)
- 0.298 Blueberry Cheesecake (RSP10684)
- 0.299 RKM-2018-034 (RSP11126)
- 0.301 Hermaphrodite ResearchSample2 (RSP11050)
- 0.306 Recon (RSP10755)
- 0.306 Italian Kiss (RSP11034)
- 0.308 Liberty Haze (RSP11000)
- 0.310 RKM-2018-032 (RSP11124)
- 0.311 Gold Cracker (RSP11048)
- 0.313 RKM-2018-033 (RSP11125)
- 0.317 Blue Dream (RSP11033)
- 0.320 Durban Poison (RSP11014)
- 0.321 Hermaphrodite Research Sample1 (RSP11049)
- 0.321 Sour Raspberry (RSP10551)
Most genetically distant strains (All Samples)
- 0.488 Cherry Blossom (RSP11318)
- 0.487 Cherry Blossom (RSP11323)
- 0.484 Unknown- Cherry Wine - 001 (RSP11268)
- 0.476 Cherry Blossom (RSP11301)
- 0.475 Jamaican Lion (RSP12916)
- 0.470 JL x NSPM1 4 (RSP11482)
- 0.469 Tanao Sri 46 (RSP11486)
- 0.466 AVIDEKEL 2 0 (RSP11174)
- 0.460 Cherry Blossom (RSP11274)
- 0.454 Cherry Blossom (RSP11312)
- 0.452 Cherry Blossom (RSP11300)
- 0.451 Cherry Blossom (RSP11328)
- 0.449 Cherry Blossom (RSP11325)
- 0.448 Unknown- Cherry Wine - 002 (RSP11269)
- 0.446 JL yellow (RSP11075)
- 0.445 Avidekel 05MAY2017 (RSP10938)
- 0.443 JL X NSPM1 12 (RSP11472)
- 0.438 Ringo s Gift Katie s Cut (RSP11624)
- 0.436 Cherry Blossom (RSP11309)
- 0.434 Unknown- Cherry Wine - 003 (RSP11270)
Most genetically distant strains (Base Tree)
- 0.443 JL yellow (RSP11075)
- 0.432 Cbot-2019-001 (RSP11129)
- 0.408 Cbot-2019-005 (RSP11133)
- 0.404 RKM-2018-018 (RSP11110)
- 0.403 RKM-2018-028 (RSP11120)
- 0.402 Black Beauty (RSP11035)
- 0.395 Kush Hemp E1 (RSP11128)
- 0.394 Cherry (RSP11143)
- 0.385 Futura 75 (RSP10664)
- 0.384 RKM-2018-006 (RSP11097)
- 0.383 Ivory (RSP10668)
- 0.379 Cherry (RSP11142)
- 0.379 Tygra (RSP10667)
- 0.377 Cbot-2019-004 (RSP11132)
- 0.376 Carmagnola (RSP10979)
- 0.375 Lovrin (RSP10658)
- 0.373 Fedora 17 (RSP10661)
- 0.373 Santhica27 (RSP11047)
- 0.371 Feral (RSP10890)
- 0.369 RKM-2018-023 (RSP11115)
Nearest genetic relative in Phylos dataset
Phylos Strain SRR8349284
- Overlapping SNPs:
- 97
- Concordance:
- 58
Nearest genetic relative in Lynch dataset
Lynch Strain SRR3495250
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
4b2eef0d19c632b9
ad679e060da916ea d335ab1583d67011 484d492cc95da156 - Stamping Certificate
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833de32677d20296
d780aaf910ae7ffe 2dd013cd4573af9c 63ecec9ed41b58bd