Advanced Strain Search

Pearadise x Pineapple Pez Melonade #2

RSP 12973

Grower: Team Elite Genetics

General Information

Sample Name
P X Pez #2 - A - 20231207
Accession Date
December 6, 2023
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.26%

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0299

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.1545delT p.Phe515fs frameshift variant high contig741 4416282

IGV: Start, Jump

TA/T
NGS:
0.001
C90:
0.000
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.181
C90:
0.000

Variants (Select Genes of Interest)
EMF1-2

UniProt

c.1439delA p.Asn480fs frameshift variant high contig885 2317

IGV: Start, Jump

GA/G
NGS:
0.001
C90:
0.000
PHL-2 c.455A>C p.Asp152Ala missense variant moderate contig2621 339191

IGV: Start, Jump

A/C
NGS:
0.239
C90:
0.507
PHL-2 c.932T>C p.Leu311Pro missense variant moderate contig2621 340210

IGV: Start, Jump

T/C
NGS:
0.297
C90:
0.268
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.472
C90:
0.555
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.456
C90:
0.531
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.486
C90:
0.746
PHL-2 c.2624C>T p.Ser875Phe missense variant moderate contig2621 342667

IGV: Start, Jump

C/T
NGS:
0.281
C90:
0.268
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.409
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.611
C90:
0.890
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.146
C90:
0.000
PHL-2 c.2903_2905dupGCA p.Ser968dup disruptive inframe insertion moderate contig2621 342939

IGV: Start, Jump

T/TGCA
NGS:
0.239
C90:
0.522
PHL-2 c.2933G>T p.Arg978Leu missense variant moderate contig2621 342976

IGV: Start, Jump

G/T
NGS:
0.302
C90:
0.297
PHL-2 c.2936T>G p.Val979Gly missense variant moderate contig2621 342979

IGV: Start, Jump

T/G
NGS:
0.174
C90:
0.000
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.599
C90:
0.885
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.131
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.513
C90:
0.684
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.438
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.523
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.357
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.335
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.351
C90:
0.689
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.114
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.112
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.117
C90:
0.000
AAE1-1

UniProt

c.614delC p.Pro205fs frameshift variant high contig606 3243656

IGV: Start, Jump

TG/T
NGS:
0.001
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.437
C90:
0.550
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.337
C90:
0.000
ELF4

UniProt

c.144T>A p.Asp48Glu missense variant moderate contig869 622426

IGV: Start, Jump

A/T
NGS:
0.047
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.582
C90:
0.493
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.386
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.649
C90:
0.938
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.385
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.570
C90:
0.545
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.342
C90:
0.000
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.627
C90:
0.632
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.507
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.620
C90:
0.531
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.113
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.300
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.525
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.544
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.522
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.273
C90:
0.000
AAE1-2

UniProt

c.688G>A p.Asp230Asn missense variant moderate contig81 209650

IGV: Start, Jump

G/A
NGS:
0.102
C90:
0.000
AAE1-2

UniProt

c.948_949insA p.Asp317fs frameshift variant high contig81 209910

IGV: Start, Jump

C/CA
NGS:
0.162
C90:
0.000
AAE1-2

UniProt

c.952delC p.Gln318fs frameshift variant high contig81 209912

IGV: Start, Jump

AC/A
NGS:
0.160
C90:
0.000
AAE1-2

UniProt

c.953A>G p.Gln318Arg missense variant moderate contig81 209915

IGV: Start, Jump

A/G
NGS:
0.160
C90:
0.000
AAE1-2

UniProt

c.955C>T p.Arg319Cys missense variant moderate contig81 209917

IGV: Start, Jump

C/T
NGS:
0.158
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.300
C90:
0.000
AAE1-2

UniProt

c.1177G>A p.Asp393Asn missense variant moderate contig81 210139

IGV: Start, Jump

G/A
NGS:
0.089
C90:
0.000
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.563
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.570
C90:
0.904
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.584
C90:
0.861
HDS-1

UniProt

c.1475C>A p.Pro492Gln missense variant moderate contig1891 886162

IGV: Start, Jump

G/T
NGS:
0.017
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.648
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.481
C90:
0.646
AAE1-3

UniProt

c.659G>A p.Arg220Gln missense variant moderate contig976 1083195

IGV: Start, Jump

C/T
NGS:
0.160
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.258
C90:
0.000
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.167
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.169
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.542
C90:
0.852
PIE1-1

UniProt

c.6725C>T p.Ala2242Val missense variant moderate contig1225 2289290

IGV: Start, Jump

C/T
NGS:
0.359
C90:
0.737
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.382
C90:
0.000
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.215
C90:
0.000
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.139
C90:
0.000

Nearest genetic relatives (All Samples)

closely related moderately related distantly related
  1. 0.191 Styrofoam Cup x Pineapple Pez Melonade 5 (RSP12979)
  2. 0.197 Styrofoam Cup x Pineapple Pez Melonade 3 (RSP12976)
  3. 0.199 Pearadise x Pineapple Pez Melonade 6 (RSP12978)
  4. 0.226 Serious Happiness (RSP10763)
  5. 0.234 The Gift (RSP10988)
  6. 0.236 Pure Power Plant (RSP11265)
  7. 0.238 Liberty Haze (RSP11000)
  8. 0.242 Blueberry Cheesecake (RSP10684)
  9. 0.242 Pie Hoe (RSP11073)
  10. 0.243 RKM-2018-008 (RSP11099)
  11. 0.244 Styrofoam Cup x Pearadise 6 (RSP12986)
  12. 0.244 Kimbo Slice (RSP10997)
  13. 0.245 SourD (RSP12092)
  14. 0.245 Pai 60w (RSP11743)
  15. 0.247 MENDO BREATH (RSP11242)
  16. 0.247 Blue Dream (RSP11010)
  17. 0.248 Wedding Pie (RSP11745)
  18. 0.248 NSPM1 (RSP11362)
  19. 0.248 Styrofoam Cup x Orange Juice 5 (RSP12974)
  20. 0.249 Blue Dream (RSP11004)

Nearest genetic relatives (Base Tree)

closely related moderately related distantly related
  1. 0.241 The Gift (RSP10988)
  2. 0.242 Kimbo Slice (RSP10997)
  3. 0.249 Pie Hoe (RSP11073)
  4. 0.251 Liberty Haze (RSP11000)
  5. 0.253 Blueberry Cheesecake (RSP10684)
  6. 0.257 Blueberry Cheesecake (RSP10680)
  7. 0.263 RKM-2018-026 (RSP11118)
  8. 0.270 RKM-2018-032 (RSP11124)
  9. 0.272 Hermaphrodite ResearchSample2 (RSP11050)
  10. 0.276 Skywalker OG (RSP10837)
  11. 0.278 RKM-2018-034 (RSP11126)
  12. 0.280 RKM-2018-020 (RSP11112)
  13. 0.281 Gold Cracker (RSP11048)
  14. 0.282 RKM-2018-004 (RSP11096)
  15. 0.290 RKM-2018-033 (RSP11125)
  16. 0.291 UP Sunrise (RSP10989)
  17. 0.297 RKM-2018-019 (RSP11111)
  18. 0.298 RKM-2018-029 (RSP11121)
  19. 0.303 Recon (RSP10755)
  20. 0.304 Durban Poison (RSP11014)

Most genetically distant strains (All Samples)

closely related moderately related distantly related
  1. 0.459 Cherry Blossom (RSP11323)
  2. 0.454 Unknown- Cherry Wine - 001 (RSP11268)
  3. 0.451 Cherry Blossom (RSP11318)
  4. 0.444 Cherry Blossom (RSP11301)
  5. 0.442 Cherry Blossom (RSP11328)
  6. 0.440 Unknown- Cherry Wine - 003 (RSP11270)
  7. 0.437 Unknown- Cherry Wine - 002 (RSP11269)
  8. 0.436 Tanao Sri 46 (RSP11486)
  9. 0.434 Cherry Blossom (RSP11309)
  10. 0.429 Cherry Blossom (RSP11300)
  11. 0.428 Cherry Blossom (RSP11274)
  12. 0.425 Chematonic Cannatonic x Chemdawg (RSP11394)
  13. 0.425 Cherry Blossom (RSP11298)
  14. 0.424 Tiger Tail 30 (RSP11484)
  15. 0.422 Cherry Blossom (RSP11312)
  16. 0.422 Avidekel 05MAY2017 (RSP10938)
  17. 0.421 Cherry Blossom (RSP11311)
  18. 0.413 Wife (RSP11148)
  19. 0.410 Cherry Blossom (RSP11325)
  20. 0.410 Cherry Blossom (RSP11306)

Most genetically distant strains (Base Tree)

closely related moderately related distantly related
  1. 0.386 Cbot-2019-005 (RSP11133)
  2. 0.385 JL yellow (RSP11075)
  3. 0.380 Cbot-2019-004 (RSP11132)
  4. 0.375 Cbot-2019-001 (RSP11129)
  5. 0.373 Carmagnola (RSP11037)
  6. 0.373 Feral (RSP10890)
  7. 0.372 RKM-2018-006 (RSP11097)
  8. 0.370 RKM-2018-028 (RSP11120)
  9. 0.369 Cherry (RSP11143)
  10. 0.364 Fedora 17 (RSP10661)
  11. 0.362 Monoica (RSP10241)
  12. 0.362 Black Beauty (RSP11035)
  13. 0.360 Cherry (RSP11142)
  14. 0.356 Santhica27 (RSP11047)
  15. 0.356 Blueberry Cheesecake (RSP10672)
  16. 0.356 Lovrin (RSP10658)
  17. 0.355 Kush Hemp E1 (RSP11128)
  18. 0.355 Carmagnola (RSP10979)
  19. 0.355 Futura 75 (RSP10664)
  20. 0.354 RKM-2018-018 (RSP11110)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4451141
Overlapping SNPs:
96
Concordance:
55

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
2c7005973e2b6c88c691a6b5e59961d7a459d23bb8d86ffa06f10f32cafa5556
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
a63ffc8fbf84645ea5224e7d43b6b898394880f7f59cb7ac73406a1b485f7224
QR code for RSP12973

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