Advanced Strain Search

Powdered Donuts

RSP 13269

Grower: Zamir Punja

General Information

Sample Name
Powdered_Donuts__AutoM-Fort-Root__20241120
Accession Date
November 19, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.42%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0181
male female RSP13269

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
PHL-2 c.2903_2905dupGCA p.Ser968dup disruptive inframe insertion moderate contig2621 342939

IGV: Start, Jump

T/TGCA
NGS:
0.018
C90:
0.522
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
AAE1-2

UniProt

c.1541T>C p.Val514Ala missense variant moderate contig81 210503

IGV: Start, Jump

T/C
NGS:
0.050
C90:
0.000
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.035 PD St-M (RSP13149)
  2. 0.036 Powdered Donuts (RSP13266)
  3. 0.036 Powdered Donuts (RSP13263)
  4. 0.037 Powdered Donuts (RSP13270)
  5. 0.037 Powdered Donuts (RSP13273)
  6. 0.037 Powdered Donuts (RSP13268)
  7. 0.039 Powdered Donuts (RSP13272)
  8. 0.042 PD Lf-M (RSP13150)
  9. 0.044 JFG (RSP13085)
  10. 0.050 Powdered Donuts (RSP13264)
  11. 0.069 JFG (RSP12927)
  12. 0.083 Powdered Donuts (RSP13267)
  13. 0.084 Powdered Donuts (RSP12939)
  14. 0.088 Dried Leaves (RSP13120)
  15. 0.099 JFG (RSP12933)
  16. 0.130 Powdered Donuts (RSP13265)
  17. 0.137 Powdered Donuts (RSP13271)
  18. 0.169 Old Family Purple (RSP12098)
  19. 0.184 SFVxTK (RSP11072)
  20. 0.189 Skywalker OG (RSP10837)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.454 Cherry Blossom (RSP11317)
  2. 0.441 Northern Skunk (RSP11456)
  3. 0.440 Big Red (RSP13217)
  4. 0.439 80E (RSP11213)
  5. 0.437 Cherry Fog XL (RSP11458)
  6. 0.429 Cherry Blossom (RSP11323)
  7. 0.421 Cherry Blossom (RSP11328)
  8. 0.421 Cherry Blossom (RSP11311)
  9. 0.420 Cherry Blossom (RSP11298)
  10. 0.418 Cherry Blossom (RSP11318)
  11. 0.414 Cherry Blossom (RSP11330)
  12. 0.409 Cherry Blossom (RSP11312)
  13. 0.409 Cherry Blossom (RSP11306)
  14. 0.408 Cherry Blossom (RSP11324)
  15. 0.406 Cherry Blossom (RSP11308)
  16. 0.406 Jamaican Lion (RSP12916)
  17. 0.404 Cherry Blossom (RSP11314)
  18. 0.404 Cherry Blossom (RSP11309)
  19. 0.404 R1in136 (SRR14708227)
  20. 0.402 Cherry Blossom (RSP11335)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8348999
Overlapping SNPs:
97
Concordance:
69

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495224
Overlapping SNPs:
8
Concordance:
8

Blockchain Registration Information

SHASUM Hash
68a228126a95abb432c9af971204f94163c8dc470c254f5b5a9e6ca3a3c27dbc
QR code for RSP13269

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