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Big Red

RSP 13217

Grower: Wisconsin Crop Innovation Center

General Information

Accession Date
September 18, 2024
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.74%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0321
male female RSP13217

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
FLD

UniProt

c.1437delT p.Phe479fs frameshift variant high contig1450 2046596

IGV: Start, Jump

CA/C
NGS:
0.000
C90:
0.000
AAE1-3

UniProt

c.746G>C p.Ser249Thr missense variant moderate contig976 1083108

IGV: Start, Jump

C/G
NGS:
0.004
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
GGR

UniProt

c.581C>T p.Ala194Val missense variant moderate contig2282 549573

IGV: Start, Jump

C/T
NGS:
0.015
C90:
0.105
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000

Nearest genetic relatives (All Samples)

0.000.080.170.250.33
0 0.083 0.167 0.250 0.333
closely related moderately related distantly related
  1. 0.246 Wife (RSP11148)
  2. 0.267 Ringo s Gift Katie s Cut (RSP11624)
  3. 0.278 Cbot-2019-001 (RSP11129)
  4. 0.286 CBD2 V 2 (RSP12669)
  5. 0.288 2nd Gen Cherry (RSP11141)
  6. 0.294 Cherry Blossom (RSP11328)
  7. 0.296 Cherry Wine (RSP11145)
  8. 0.297 Cherry Blossom (RSP11318)
  9. 0.302 Cherry (RSP11143)
  10. 0.308 AVIDEKEL 2 0 (RSP11174)
  11. 0.313 Cherry Blossom (RSP11310)
  12. 0.317 Queen Dream CBG (RSP11293)
  13. 0.317 Otto (RSP11147)
  14. 0.323 Chematonic Cannatonic x Chemdawg (RSP11394)
  15. 0.323 QLF4 (RSP11441)
  16. 0.326 Midnight (RSP10941)
  17. 0.327 UP Sunrise (RSP10989)
  18. 0.327 Queen Dream CBG (RSP11297)
  19. 0.329 Alaska (RSP10939)
  20. 0.331 Cherry Blossom (RSP11332)

Most genetically distant strains (All Samples)

0.000.140.280.430.57
0 0.142 0.283 0.425 0.567
closely related moderately related distantly related
  1. 0.539 Rainbow Belts 1 0 (RSP12911)
  2. 0.523 GMO x Garlic Breath (RSP12507)
  3. 0.519 JL Cross 5 (RSP11506)
  4. 0.518 GMO (RSP12091)
  5. 0.514 Animal Tree x Skittles 4 (RSP12792)
  6. 0.513 NSPM x NSPM (RSP11487)
  7. 0.511 Rainbow Belts 3 0 11 (RSP12801)
  8. 0.509 BagSeed (RSP12627)
  9. 0.509 BagSeed (RSP12501)
  10. 0.508 RKM-2018-034 (RSP11126)
  11. 0.507 Rainbow Belts 2 0 (RSP12802)
  12. 0.507 Fatso (RSP11741)
  13. 0.506 JABBA S STASH (RSP11348)
  14. 0.505 Abacus (RSP11266)
  15. 0.504 Red Eye OG (RSP11190)
  16. 0.504 Stormy (RSP11454)
  17. 0.503 Kush Hemp E1 (RSP11128)
  18. 0.502 Eran Almog (RSP10937)
  19. 0.502 GMO x Zkittlez 43 (RSP11976)
  20. 0.502 Styrofoam Cup x Orange Juice 1 (RSP12980)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448797
Overlapping SNPs:
87
Concordance:
55

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495180
Overlapping SNPs:
2
Concordance:
2
QR code for RSP13217

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