Advanced Strain Search

Powdered Donuts

RSP 13267

Grower: Zamir Punja

General Information

Sample Name
Powdered_Donuts__AutoRS-Fort-Root__20241120
Accession Date
November 19, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.47%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0183
male female RSP13267

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
FAD2-2

UniProt

c.154G>A p.Val52Ile missense variant moderate contig83 1803215

IGV: Start, Jump

C/T
NGS:
0.022
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
FLD

UniProt

c.2929T>C p.Phe977Leu missense variant moderate contig1450 2044103

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.349

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.070 PD St-M (RSP13149)
  2. 0.070 Powdered Donuts (RSP13270)
  3. 0.071 Powdered Donuts (RSP13268)
  4. 0.071 Powdered Donuts (RSP13266)
  5. 0.072 Powdered Donuts (RSP13272)
  6. 0.072 Powdered Donuts (RSP13263)
  7. 0.073 Powdered Donuts (RSP13273)
  8. 0.075 PD Lf-M (RSP13150)
  9. 0.081 JFG (RSP13085)
  10. 0.082 Powdered Donuts (RSP13264)
  11. 0.083 Powdered Donuts (RSP13269)
  12. 0.104 JFG (RSP12927)
  13. 0.113 Powdered Donuts (RSP12939)
  14. 0.118 Dried Leaves (RSP13120)
  15. 0.126 JFG (RSP12933)
  16. 0.152 Powdered Donuts (RSP13271)
  17. 0.157 Powdered Donuts (RSP13265)
  18. 0.187 Old Family Purple (RSP12098)
  19. 0.193 SFVxTK (RSP11072)
  20. 0.194 Skywalker OG (RSP10837)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.465 Northern Skunk (RSP11456)
  2. 0.460 Cherry Blossom (RSP11317)
  3. 0.443 Cherry Fog XL (RSP11458)
  4. 0.443 Big Red (RSP13217)
  5. 0.440 80E (RSP11213)
  6. 0.432 Cherry Blossom (RSP11298)
  7. 0.428 Cherry Blossom (RSP11328)
  8. 0.427 Cherry Blossom (RSP11311)
  9. 0.426 Cherry Blossom (RSP11330)
  10. 0.423 Cherry Blossom (RSP11323)
  11. 0.423 Cherry Blossom (RSP11318)
  12. 0.422 Cherry Blossom (RSP11324)
  13. 0.420 Cherry Blossom (RSP11312)
  14. 0.419 CBD2 V 2 (RSP12669)
  15. 0.418 Cherry Blossom (RSP11306)
  16. 0.415 Cherry Blossom (RSP11309)
  17. 0.414 Cherry Blossom (RSP11333)
  18. 0.412 Jamaican Lion (RSP12916)
  19. 0.411 Cherry Blossom (RSP11314)
  20. 0.411 Jamaican Lion (RSP12917)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8348999
Overlapping SNPs:
89
Concordance:
63

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

SHASUM Hash
672c38ad7294843c3cdd1120303a3f1cafd2035e98ed28d8bbf7a729350bfa7b
QR code for RSP13267

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