Advanced Strain Search

Dried Leaves

RSP 13120

Grower: Zamir Punja

General Information

Sample Name
Dried Leaves-20240416
Accession Date
April 24, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.15%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0270
male female RSP13120

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.23G>A p.Ser8Asn missense variant moderate contig83 1803346

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.574A>G p.Asn192Asp missense variant moderate contig97 242280

IGV: Start, Jump

A/G
NGS:
0.042
C90:
0.579
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.225
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.088
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.078 JFG (RSP13085)
  2. 0.085 JFG (RSP12927)
  3. 0.095 Powdered Donuts (RSP12939)
  4. 0.116 JFG (RSP12933)
  5. 0.203 Old Family Purple (RSP12098)
  6. 0.206 Skywalker OG (RSP10837)
  7. 0.208 BF (RSP12931)
  8. 0.216 SFVxTK (RSP11072)
  9. 0.217 BF (RSP13086)
  10. 0.219 Champelli Red 4 (RSP12804)
  11. 0.226 501st OG (RSP11241)
  12. 0.228 Jilly bean (RSP11230)
  13. 0.229 PG (RSP12928)
  14. 0.230 East side OG (RSP12089)
  15. 0.230 PG (RSP12934)
  16. 0.231 PG (RSP13088)
  17. 0.232 BF (RSP12937)
  18. 0.233 Durban Poison 1 (RSP11013)
  19. 0.233 Noetic OG (RSP11455)
  20. 0.234 RKM-2018-012 (RSP11103)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.474 Cherry Blossom (RSP11317)
  2. 0.465 Northern Skunk (RSP11456)
  3. 0.442 Cherry Fog XL (RSP11458)
  4. 0.435 80E (RSP11213)
  5. 0.433 Cherry Blossom (RSP11298)
  6. 0.432 Cherry Blossom (RSP11323)
  7. 0.431 Cherry Blossom (RSP11311)
  8. 0.429 Cherry Blossom (RSP11330)
  9. 0.429 Cherry Blossom (RSP11328)
  10. 0.429 Cherry Blossom (RSP11314)
  11. 0.423 Cherry Blossom (RSP11306)
  12. 0.419 Cherry Blossom (RSP11334)
  13. 0.418 Cherry Blossom (RSP11324)
  14. 0.417 Cherry Blossom (RSP11318)
  15. 0.415 Cherry Blossom (RSP11309)
  16. 0.415 Cherry Blossom (RSP11312)
  17. 0.415 IUP3 (SRR14708256)
  18. 0.414 Jamaican Lion (RSP12916)
  19. 0.414 Ruderalis Indica (SRR14708267)
  20. 0.414 Tanao Sri-white-T1 (RSP11658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8348999
Overlapping SNPs:
91
Concordance:
63

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495243
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
d6af39a9d9082ea5875967fbf9c740295f7cba43660f6dc0605c4f2966458b1b
Stamping Certificate
Download PDF (39.8 KB)
SHASUM Hash
64055202c904763821085343499f7d43286770f71f8bbc349ad7ecdb89fe6dfe
QR code for RSP13120

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