T4R6
RSP 12664
Grower: plant genomic laboratory, medicinal plant research institute, DMSC
General Information
- Accession Date
- August 10, 2022
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v3 10Mb
- DNA Extracted From
- Unknown
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.224C>T | p.Ser75Phe | missense variant | moderate | contig1772 | 2082450 | C/T |
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CBDAS | c.226G>A | p.Asp76Asn | missense variant | moderate | contig1772 | 2082452 | G/A |
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CBDAS | c.242C>T | p.Pro81Leu | missense variant | moderate | contig1772 | 2082468 | C/T |
|
CBDAS | c.323G>A | p.Arg108Gln | missense variant | moderate | contig1772 | 2082549 | G/A |
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CBDAS | c.329G>A | p.Arg110Gln | missense variant | moderate | contig1772 | 2082555 | G/A |
|
CBDAS | c.347C>A | p.Ser116Tyr | missense variant | moderate | contig1772 | 2082573 | C/A | |
CBDAS | c.377C>A | p.Pro126Gln | missense variant | moderate | contig1772 | 2082603 | C/A |
|
CBDAS | c.407G>A | p.Arg136His | missense variant | moderate | contig1772 | 2082633 | G/A | |
CBDAS | c.437C>T | p.Thr146Ile | missense variant | moderate | contig1772 | 2082663 | C/T |
|
CBDAS | c.442T>A | p.Trp148Arg | missense variant | moderate | contig1772 | 2082668 | T/A |
|
THCAS | c.749C>A | p.Ala250Asp | missense variant | moderate | contig741 | 4417079 | G/T | |
THCAS | c.373G>C | p.Val125Leu | missense variant | moderate | contig741 | 4417455 | C/G |
|
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.575T>C | p.Ile192Thr | missense variant | moderate | contig2621 | 339568 | T/C |
|
PHL-2 | c.841A>T | p.Ser281Cys | missense variant | moderate | contig2621 | 340119 | A/T |
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PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1115T>G | p.Val372Gly | missense variant | moderate | contig2621 | 340393 | T/G |
|
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4a | c.967G>C | p.Asp323His | missense variant | moderate | contig700 | 1938378 | G/C |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
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PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
OAC-1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 118144 | T/C | |
OAC-1 | c.185C>T | p.Thr62Ile | missense variant | moderate | contig931 | 118179 | G/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.811G>A | p.Gly271Arg | missense variant | moderate | contig97 | 242517 | G/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1473A>C | p.Lys491Asn | missense variant | moderate | contig97 | 244304 | A/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1807G>C | p.Gly603Arg | missense variant | moderate | contig97 | 244638 | G/C |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.1982A>C | p.Asn661Thr | missense variant | moderate | contig97 | 244813 | A/C |
|
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-2 | c.151G>T | p.Ala51Ser | missense variant | moderate | contig95 | 1989818 | G/T |
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PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.99G>T | p.Glu33Asp | missense variant | moderate | contig1439 | 1493793 | C/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.2141G>C | p.Gly714Ala | missense variant | moderate | contig1891 | 884225 | C/G |
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HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.5884G>A | p.Gly1962Ser | missense variant | moderate | contig1460 | 1185715 | C/T | |
PIE1-2 | c.3554G>A | p.Arg1185Lys | missense variant | moderate | contig1460 | 1188486 | C/T | |
PIE1-2 | c.3506A>C | p.Glu1169Ala | missense variant | moderate | contig1460 | 1188534 | T/G | |
PIE1-2 | c.3505G>A | p.Glu1169Lys | missense variant | moderate | contig1460 | 1188535 | C/T |
|
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.2027A>T | p.Gln676Leu | missense variant | moderate | contig1460 | 1190013 | T/A | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1243G>C | p.Asp415His | missense variant | moderate | contig1460 | 1192155 | C/G |
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PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.665+2T>A | splice donor variant & intron variant | high | contig1460 | 1194391 | A/T |
|
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PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
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FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
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PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1348G>C | p.Asp450His | missense variant | moderate | contig1225 | 2281608 | G/C |
|
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
PIE1-1 | c.3607G>A | p.Glu1203Lys | missense variant | moderate | contig1225 | 2285222 | G/A |
|
PIE1-1 | c.3608A>C | p.Glu1203Ala | missense variant | moderate | contig1225 | 2285223 | A/C | |
PIE1-1 | c.3619G>A | p.Val1207Met | missense variant | moderate | contig1225 | 2285234 | G/A |
|
PIE1-1 | c.3656G>A | p.Arg1219Lys | missense variant | moderate | contig1225 | 2285271 | G/A | |
GGR | c.53A>G | p.Asn18Ser | missense variant | moderate | contig2282 | 549045 | A/G |
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GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.727T>C | p.Tyr243His | missense variant | moderate | contig2282 | 549719 | T/C |
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Nearest genetic relatives (All Samples)
- 0.158 PK (RSP12667)
- 0.164 T2R2 (RSP12659)
- 0.192 T4R15 (RSP12665)
- 0.193 T2R4 (RSP12660)
- 0.209 Tanao Sri-white 79 (RSP11620)
- 0.209 T4R2 (RSP12662)
- 0.210 ST (RSP12666)
- 0.221 T2R15 (RSP12661)
- 0.225 Tanao Sri 46 (RSP11486)
- 0.226 Squirrel Tail 81 (RSP11622)
- 0.232 Tanao Sri-white 80 (RSP11621)
- 0.235 Tiger Tail 78 (RSP11619)
- 0.240 Squirrel Tail 31 (RSP11485)
- 0.249 T4R4 (RSP12663)
- 0.253 Liberty Haze (RSP11000)
- 0.265 Swaziland (SRR14708271)
- 0.270 Tak-HN (RSP11618)
- 0.271 Liberty Haze (RSP10946)
- 0.272 Tiger Tail 30 (RSP11484)
- 0.278 IBR3 (SRR14708249)
Most genetically distant strains (All Samples)
- 0.450 GMO x Garlic Breath (RSP12507)
- 0.442 Cherry Blossom (RSP11333)
- 0.433 BagSeed (RSP12627)
- 0.430 GMO (RSP12091)
- 0.429 Cherry Blossom (RSP11323)
- 0.428 CHEM4 (RSP12090)
- 0.425 Cherry Blossom (RSP11308)
- 0.424 Cherry Blossom (RSP11334)
- 0.423 Cherry Blossom (RSP11335)
- 0.421 RKM-2018-012 (RSP11103)
- 0.421 Fatso (RSP11741)
- 0.419 Northern Skunk (RSP11456)
- 0.419 Rootbeer Rolex 50 (RSP12645)
- 0.418 NSPM x NSPM (RSP11487)
- 0.416 Cherry Blossom (RSP11311)
- 0.415 Red Eye OG (RSP11190)
- 0.414 Noetic OG (RSP11455)
- 0.413 Cherry Blossom (RSP11318)
- 0.412 Cherry Blossom (RSP11324)
- 0.412 GMO x [REDACTED] 43 (RSP11976)
Nearest genetic relative in Phylos dataset
Phylos Strain SRR4450142
- Overlapping SNPs:
- 85
- Concordance:
- 49
Nearest genetic relative in Lynch dataset
Lynch Strain SRR3495156
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
2e5aaa5c9d1c7159
d9665a9721e38736 8fad0fd377594880 fb796a42aaa2f2dd - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
16114694c3f5bbec
a28c2dfaf0568026 4598ebb9d1832c7e afa74f89f1fbf125