T4R2
RSP 12662
Grower: plant genomic laboratory, medicinal plant research institute, DMSC
General Information
- Accession Date
- August 10, 2022
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v3 10Mb
- DNA Extracted From
- Unknown
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.323G>A | p.Arg108Gln | missense variant | moderate | contig1772 | 2082549 | G/A |
|
CBDAS | c.329G>A | p.Arg110Gln | missense variant | moderate | contig1772 | 2082555 | G/A |
|
CBDAS | c.347C>A | p.Ser116Tyr | missense variant | moderate | contig1772 | 2082573 | C/A | |
CBDAS | c.377C>A | p.Pro126Gln | missense variant | moderate | contig1772 | 2082603 | C/A |
|
CBDAS | c.407G>A | p.Arg136His | missense variant | moderate | contig1772 | 2082633 | G/A | |
CBDAS | c.437C>T | p.Thr146Ile | missense variant | moderate | contig1772 | 2082663 | C/T |
|
CBDAS | c.442T>A | p.Trp148Arg | missense variant | moderate | contig1772 | 2082668 | T/A |
|
CBDAS | c.454G>A | p.Gly152Arg | missense variant | moderate | contig1772 | 2082680 | G/A |
|
THCAS | c.1229G>A | p.Gly410Glu | missense variant | moderate | contig741 | 4416599 | C/T |
|
THCAS | c.373G>C | p.Val125Leu | missense variant | moderate | contig741 | 4417455 | C/G |
|
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.575T>C | p.Ile192Thr | missense variant | moderate | contig2621 | 339568 | T/C |
|
PHL-2 | c.841A>T | p.Ser281Cys | missense variant | moderate | contig2621 | 340119 | A/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1115T>G | p.Val372Gly | missense variant | moderate | contig2621 | 340393 | T/G |
|
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4a | c.967G>C | p.Asp323His | missense variant | moderate | contig700 | 1938378 | G/C |
|
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.811G>A | p.Gly271Arg | missense variant | moderate | contig97 | 242517 | G/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1473A>C | p.Lys491Asn | missense variant | moderate | contig97 | 244304 | A/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1807G>C | p.Gly603Arg | missense variant | moderate | contig97 | 244638 | G/C |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.1982A>C | p.Asn661Thr | missense variant | moderate | contig97 | 244813 | A/C |
|
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.1162A>G | p.Thr388Ala | missense variant | moderate | contig382 | 881132 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.99G>T | p.Glu33Asp | missense variant | moderate | contig1439 | 1493793 | C/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
FAD4 | c.220C>G | p.Arg74Gly | missense variant | moderate | contig784 | 1690972 | C/G |
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1243G>C | p.Asp415His | missense variant | moderate | contig1460 | 1192155 | C/G |
|
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
PIE1-2 | c.1117C>G | p.Gln373Glu | missense variant | moderate | contig1460 | 1192281 | G/C | |
PIE1-2 | c.1093G>A | p.Gly365Ser | missense variant | moderate | contig1460 | 1192305 | C/T | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.665+2T>A | splice donor variant & intron variant | high | contig1460 | 1194391 | A/T |
|
|
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
PIE1-1 | c.773A>G | p.Asn258Ser | missense variant & splice region variant | moderate | contig1225 | 2279897 | A/G | |
PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1348G>C | p.Asp450His | missense variant | moderate | contig1225 | 2281608 | G/C |
|
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
PIE1-1 |
c.1548_1549i |
p.Gln516_Glu |
conservative inframe insertion | moderate | contig1225 | 2281807 | A/AGAT | |
PIE1-1 | c.3619G>A | p.Val1207Met | missense variant | moderate | contig1225 | 2285234 | G/A |
|
GGR | c.53A>G | p.Asn18Ser | missense variant | moderate | contig2282 | 549045 | A/G |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.727T>C | p.Tyr243His | missense variant | moderate | contig2282 | 549719 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.118 T2R4 (RSP12660)
- 0.127 T2R2 (RSP12659)
- 0.140 T4R15 (RSP12665)
- 0.159 T2R15 (RSP12661)
- 0.169 ST (RSP12666)
- 0.170 Tanao Sri-white 79 (RSP11620)
- 0.172 T4R4 (RSP12663)
- 0.178 Squirrel Tail 81 (RSP11622)
- 0.184 Squirrel Tail 31 (RSP11485)
- 0.202 Tiger Tail 78 (RSP11619)
- 0.208 Tanao Sri-white-T1 (RSP11658)
- 0.208 PK (RSP12667)
- 0.208 Tanao Sri-white 80 (RSP11621)
- 0.209 T4R6 (RSP12664)
- 0.213 Tiger Tail 30 (RSP11484)
- 0.239 Foithong-F2 (RSP11659)
- 0.263 IUL1 (SRR14708254)
- 0.265 Recon (RSP10755)
- 0.270 IBR2 (SRR14708250)
- 0.271 Tak-HN (RSP11618)
Most genetically distant strains (All Samples)
- 0.470 Cherry Blossom (RSP11318)
- 0.459 Cherry Blossom (RSP11323)
- 0.451 Cherry Blossom (RSP11301)
- 0.449 Cherry Blossom (RSP11300)
- 0.446 Cherry Blossom (RSP11331)
- 0.437 Cherry Blossom (RSP11312)
- 0.437 Cherry Blossom (RSP11328)
- 0.429 GG4 (RSP11978)
- 0.426 Cherry Blossom (RSP11302)
- 0.423 Unknown- Cherry Wine - 001 (RSP11268)
- 0.422 Cherry Blossom (RSP11325)
- 0.421 Cherry Blossom (RSP11319)
- 0.420 Cherry Blossom (RSP11310)
- 0.419 Northern Skunk (RSP11456)
- 0.417 Cherry Blossom (RSP11299)
- 0.416 Queen Dream (RSP11278)
- 0.415 Cherry Blossom (RSP11315)
- 0.415 Cherry Blossom (RSP11316)
- 0.414 Queen Dream CBG (RSP11295)
- 0.413 Cherry Blossom (RSP11306)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 91
- Concordance:
- 64
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5
Blockchain Registration Information
- Transaction ID
-
dc37ba8740074d97
ffc5e2832ad3a2b4 bfaa72c6bfa34bc5 0089fe0a7057568f - Stamping Certificate
- Download PDF (39.5 KB)
- SHASUM Hash
-
b5aba71aa225b389
4c37a4d7af40f9dd 1c40e02d32da4b9e efa3cc87b3c3600d