UC_70
SRR 14419679
General Information
- Accession Date
- April 18, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
- THC + THCA
- 0.0011%
- CBD + CBDA
- 0.0378%
- THCV + THCVA
- n/a
- CBC + CBCA
- 0.%
- CBG + CBGA
- 0.0009%
- CBN + CBNA
- n/a
Terpenoids
- α-Bisabolol
- n/a
- Borneol
- n/a
- Camphene
- 0.0001%
- Carene
- 0.%
- Caryophyllene oxide
- 0.0011%
- β-Caryophyllene
- 0.0014%
- Fenchol
- n/a
- Geraniol
- 0.%
- α-Humulene
- n/a
- Limonene
- n/a
- Linalool
- 0.%
- Myrcene
- n/a
- α-Phellandrene
- n/a
- Terpinolene
- n/a
- α-Terpineol
- n/a
- α-Terpinene
- 0.0002%
- γ-Terpinene
- 0.0001%
- Total Nerolidol
- n/a
- Total Ocimene
- 0.%
- α-Pinene
- 0.0043%
- β-Pinene
- n/a
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.127C>T | p.Arg43* | stop gained | high | contig83 | 1803242 | G/A |
|
FAD2-2 | c.110C>T | p.Ala37Val | missense variant | moderate | contig83 | 1803259 | G/A |
|
FAD2-2 | c.75C>A | p.His25Gln | missense variant | moderate | contig83 | 1803294 | G/T |
|
ELF3 |
c.364_366del |
p.Lys122del | conservative inframe deletion | moderate | contig97 | 242066 | AAAG/A |
|
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1366T>G | p.Leu456Val | missense variant | moderate | contig97 | 244197 | T/G |
|
ELF3 | c.1435G>C | p.Ala479Pro | missense variant | moderate | contig97 | 244266 | G/C |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.146delA | p.Asn49fs | frameshift variant | high | contig81 | 209105 | TA/T |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.40G>A | p.Ala14Thr | missense variant | moderate | contig850 | 3065250 | C/T |
|
Edestin | c.17C>T | p.Ser6Leu | missense variant | moderate | contig850 | 3065273 | G/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.5884G>A | p.Gly1962Ser | missense variant | moderate | contig1460 | 1185715 | C/T | |
PIE1-2 | c.2188G>A | p.Ala730Thr | missense variant | moderate | contig1460 | 1189852 | C/T | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 |
c.627_629dup |
p.Val210dup | disruptive inframe insertion | moderate | contig883 | 270231 | A/ATGT |
|
FT |
c.413_413+1i |
splice donor variant & intron variant | high | contig1561 | 3126450 | T/TGTATGCA |
|
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.655C>T | p.Pro219Ser | missense variant | moderate | contig976 | 1083199 | G/A |
|
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 |
c.483_484ins |
p.Thr161dup | conservative inframe insertion | moderate | contig976 | 1083541 | C/CAGT |
|
AAE1-3 |
c.480_481ins |
p.Asn160_Thr |
stop gained & conservative inframe insertion | high | contig976 | 1083544 |
T/TTGACCGAGG |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.367C>T | p.Arg123Trp | missense variant | moderate | contig976 | 1083658 | G/A |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
FAD7A-1 | c.691G>A | p.Gly231Ser | missense variant | moderate | contig510 | 69995 | G/A |
|
PIE1-1 | c.3706A>G | p.Thr1236Ala | missense variant | moderate | contig1225 | 2285321 | A/G |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
PKSB-3 | c.509T>C | p.Val170Ala | missense variant & splice region variant | moderate | contig93 | 3336743 | T/C |
|
PKSB-3 | c.1490C>T | p.Ala497Val | missense variant | moderate | contig93 | 3339597 | C/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.076 VIR 483 (SRR14708238)
- 0.092 VIR 37 - Novgorod-Seversky - cv (SRR14708234)
- 0.097 Kompolti (SRR14708277)
- 0.106 PCL1 (SRR14708246)
- 0.108 R2in135 (SRR14708236)
- 0.108 B52 (SRR14708255)
- 0.109 Doug s Varin (RSP11243)
- 0.110 Tiborszallasi (SRR14708273)
- 0.111 Lift (RSP11378)
- 0.111 UC 167 (SRR14419585)
- 0.111 VIR 369 (SRR14708231)
- 0.113 Electra (RSP11366)
- 0.114 VIR 483 (SRR14708240)
- 0.118 IUL3 (SRR14708252)
- 0.118 Hawaii Maui Waui (SRR14708262)
- 0.119 Whitey (RSP11363)
- 0.120 Carmagnola (SRR14708200)
- 0.120 Domnesia (RSP11184)
- 0.121 Durban Poison 1 (RSP10996)
- 0.121 Suver Haze (RSP11364)
Most genetically distant strains (All Samples)
- 0.452 JL yellow (RSP11075)
- 0.430 JL 3rd Gen Mother (RSP11214)
- 0.425 80E (RSP11213)
- 0.404 JL 4th Gen 2 (RSP11194)
- 0.402 JL 4th Gen 5 (RSP11199)
- 0.396 JL 4th Gen 1 (RSP11193)
- 0.387 80E (RSP11211)
- 0.376 JL 3rd Gen Mother (RSP11197)
- 0.368 Danny Noonan (RSP11070)
- 0.365 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.361 80E (RSP11212)
- 0.359 UC 170 (SRR14419582)
- 0.358 JL 4th Gen 4 (RSP11198)
- 0.349 Skunk 18 (RSP11038)
- 0.349 Chem 91 (RSP11185)
- 0.349 Carmaleonte (RSP11207)
- 0.349 Feral (RSP11205)
- 0.347 Futura 75 (RSP10664)
- 0.347 Cbot-2019-005 (RSP11133)
- 0.344 R4 (RSP11617)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 17
- Concordance:
- 13
Blockchain Registration Information
- SHASUM Hash
-
1361983db67b6bed
49c7e9fc9a8741b9 41f035cdb8149922 9c077d99d2e90d77