Tiborszallasi
SRR 14708273
General Information
- Sample Name
- HTI
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
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CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
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Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
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GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
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EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
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EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
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PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PKSG-4b | c.557+2T>C | splice donor variant & intron variant | high | contig700 | 2721114 | A/G |
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PKSG-4b |
c.509_510ins |
p.Glu172fs | frameshift variant | high | contig700 | 2721163 |
T/TGGAAAACTT |
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PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
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PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
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PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
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PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
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PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
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PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2a |
c.-22_2delTA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945631 |
CATATTATTATT |
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DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF3 | c.1229+2T>C | splice donor variant & intron variant | high | contig97 | 243389 | T/C |
|
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ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
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AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
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AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
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AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
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AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
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PKSG-2b | c.1136G>A | p.Arg379His | missense variant | moderate | contig700 | 1950502 | C/T |
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PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
EMF2 | c.434C>T | p.Ser145Phe | missense variant | moderate | contig954 | 3049270 | C/T | |
EMF2 | c.1183G>A | p.Glu395Lys | missense variant | moderate | contig954 | 3054195 | G/A |
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EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
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EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1742C>G | p.Thr581Ser | missense variant | moderate | contig954 | 3059899 | C/G |
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EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT | c.196A>G | p.Ile66Val | missense variant | moderate | contig1561 | 3124620 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
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aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
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aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
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aPT4 | c.634C>A | p.Pro212Thr | missense variant | moderate | contig121 | 2830912 | C/A |
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aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
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FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
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FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
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AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
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AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
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AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
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AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
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AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
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GGR | c.32C>A | p.Thr11Lys | missense variant | moderate | contig2282 | 549024 | C/A |
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GGR | c.232G>C | p.Val78Leu | missense variant | moderate | contig2282 | 549224 | G/C |
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GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
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GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
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PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
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Nearest genetic relatives (All Samples)
- 0.217 Carmagnola (SRR14708200)
- 0.218 Carmagnola (RSP10979)
- 0.219 Tisza (RSP10659)
- 0.219 Carmagnola (RSP10982)
- 0.219 Carmagnola (RSP10976)
- 0.220 Carmagnola (RSP10978)
- 0.224 Tisza (RSP11045)
- 0.225 VIR 493 - Glukhovskaja 10 Zheltostebel naja (SRR14708230)
- 0.225 Tisza (RSP11044)
- 0.227 Carmagnola (RSP11039)
- 0.227 Uniko B (SRR14708278)
- 0.227 Carmagnola (RSP11037)
- 0.228 Kompolti (SRR14708277)
- 0.228 Ivory (RSP10668)
- 0.230 Chamaeleon (SRR14708197)
- 0.231 Diana (RSP10235)
- 0.232 Tygra (RSP10667)
- 0.233 Santhica27 (RSP11047)
- 0.233 Carmagnola (RSP10655)
- 0.233 C-930 lot 211005 (RSP12603)
Most genetically distant strains (All Samples)
- 0.447 Cherry Blossom (RSP11323)
- 0.439 Cherry Blossom (RSP11318)
- 0.432 Cherry Blossom (RSP11312)
- 0.429 Cherry Blossom (RSP11328)
- 0.426 Cherry Blossom (RSP11298)
- 0.425 Cherry Blossom (RSP11300)
- 0.422 Unknown--Cherry Wine---001- (RSP11268)
- 0.422 Cherry Blossom (RSP11301)
- 0.421 Chem 91 (RSP11185)
- 0.419 BagSeed (RSP12627)
- 0.419 Cherry Blossom (RSP11311)
- 0.414 Cherry Blossom (RSP11308)
- 0.412 GMO x Garlic Breath (RSP12507)
- 0.412 Cherry Blossom (RSP11334)
- 0.411 Cherry Blossom (RSP11335)
- 0.411 Cherry Blossom (RSP11331)
- 0.409 Fatso (RSP11741)
- 0.408 GMO x [REDACTED] #43 (RSP11976)
- 0.406 Cherry Blossom (RSP11309)
- 0.406 Chematonic -Cannatonic x Chemdawg- (RSP11394)
Nearest genetic relative in Phylos dataset
Phylos Strain SRR8346932
- Overlapping SNPs:
- 14
- Concordance:
- 11
Nearest genetic relative in Lynch dataset
Lynch Strain SRR3495242
- Overlapping SNPs:
- 2
- Concordance:
- 2