Advanced Strain Search

Grivo

RSP 12797

Grower: B

General Information

Sample Name
Grivo-20221019
Accession Date
October 19, 2022
Reported Plant Sex
Female
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.1%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0914
male female RSP12797

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF5

UniProt

c.520A>G p.Thr174Ala missense variant moderate contig382 880382

IGV: Start, Jump

A/G
NGS:
0.015
C90:
0.048
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
PIE1-2

UniProt

c.1289A>G p.Asp430Gly missense variant moderate contig1460 1192109

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
PIE1-2

UniProt

c.1274G>A p.Ser425Asn missense variant moderate contig1460 1192124

IGV: Start, Jump

C/T
NGS:
0.002
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.266 RKM-2018-018 (RSP11110)
  2. 0.268 Lemon G13 (RSP11465)
  3. 0.273 Cheese (RSP10460)
  4. 0.275 Hermaphrodite Research Sample1 (RSP11049)
  5. 0.276 Blue Dream (RSP11007)
  6. 0.276 Blue Dream (RSP11017)
  7. 0.277 JL 4th Gen 7 (RSP11153)
  8. 0.277 Hermaphrodite Research Sample1 (RSP11042)
  9. 0.277 HARLETSU F3 (RSP12641)
  10. 0.279 RKM-2018-003 (RSP11094)
  11. 0.281 Banana Kush (RSP11739)
  12. 0.281 Blue Dream (RSP11006)
  13. 0.282 Serious Happiness (RSP10763)
  14. 0.282 Black 84 (RSP11188)
  15. 0.283 RKM-2018-007 (RSP11098)
  16. 0.283 Citrix (RSP11177)
  17. 0.284 Miss X (RSP10999)
  18. 0.285 Blue Dream (RSP11010)
  19. 0.286 Bordello (RSP11228)
  20. 0.286 RKM-2018-028 (RSP11120)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.458 Cherry Blossom (RSP11333)
  2. 0.446 Cherry Blossom (RSP11324)
  3. 0.442 Cherry Blossom (RSP11317)
  4. 0.433 Cherry Blossom (RSP11311)
  5. 0.431 Cherry Blossom (RSP11314)
  6. 0.427 Cherry Blossom (RSP11300)
  7. 0.425 BagSeed (RSP12627)
  8. 0.423 Tanao Sri-white-T1 (RSP11658)
  9. 0.420 Cherry (RSP11142)
  10. 0.419 Noetic OG (RSP11455)
  11. 0.418 80E (RSP11213)
  12. 0.418 Right Mark (RSP11628)
  13. 0.413 Cherry Blossom (RSP11328)
  14. 0.413 Cherry Blossom (RSP11309)
  15. 0.413 wo wo (RSP11417)
  16. 0.412 Fatso (RSP11741)
  17. 0.411 Red Eye OG (RSP11190)
  18. 0.410 RKM-2018-026 (RSP11118)
  19. 0.409 NSPM x NSPM (RSP11487)
  20. 0.407 Cherry Blossom (RSP11335)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346920
Overlapping SNPs:
79
Concordance:
46

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495285
Overlapping SNPs:
11
Concordance:
11

Blockchain Registration Information

Transaction ID
6b1178900c8f5ecd1a21f13226461c96ee8cc09c87ee956effb72243ec841f6f
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
6b39a45debaa3a9e809367fc9856b2a82b71835ae5b1c84b4dd2dbafdb774db0
QR code for RSP12797

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