Advanced Strain Search

Black Beauty

RSP 11036

Grower: Emerald Farms

General Information

Sample Name
Black Beauty_high THCv
Accession Date
November 19, 2017
Reported Plant Sex
Female
DNA Extracted From
Flower

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
11.6196%
CBD + CBDA
0.0749%
THCV + THCVA
7.%
CBC + CBCA
n/a
CBG + CBGA
n/a
CBN + CBNA
0.0095%

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.82%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0398
male female RSP11036

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.001 Black Beauty (RSP11035)
  2. 0.001 Black Beauty (RSP11175)
  3. 0.252 Harlox (RSP10641)
  4. 0.255 UnObtanium (RSP11611)
  5. 0.257 PP9 (SRR14708260)
  6. 0.257 Blueberry Cheesecake (RSP10646)
  7. 0.260 Cbot-2019-006 (RSP11134)
  8. 0.262 RKM-2018-018 (RSP11110)
  9. 0.263 Grand Daddy Purple (RSP10635)
  10. 0.265 Domnesia (RSP11184)
  11. 0.266 Alaska USA (RSP11171)
  12. 0.266 SHERBERT (RSP11355)
  13. 0.267 JL 4th Gen 7 (RSP11153)
  14. 0.267 Durban Poison #1 (RSP10996)
  15. 0.267 Erez 05MAY2017 (RSP10942)
  16. 0.271 Trump x Trump (RSP11466)
  17. 0.272 BLACK JACK (RSP11346)
  18. 0.272 RKM-2018-010 (RSP11101)
  19. 0.272 Black Jack (RSP10603)
  20. 0.273 Northern Lights #5 X Haze (RSP10628)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.468 Cherry Blossom (RSP11328)
  2. 0.455 Cherry Blossom (RSP11311)
  3. 0.444 Cherry Blossom (RSP11323)
  4. 0.437 Cherry Blossom (RSP11309)
  5. 0.436 Cherry Blossom (RSP11317)
  6. 0.435 Cherry Blossom (RSP11298)
  7. 0.432 Cherry Blossom (RSP11334)
  8. 0.426 Cherry Blossom (RSP11324)
  9. 0.417 Fatso (RSP11741)
  10. 0.417 Chem 91 (RSP11185)
  11. 0.416 Cherry Blossom (RSP11301)
  12. 0.416 Right Mark (RSP11628)
  13. 0.414 GMO x Garlic Breath (RSP12507)
  14. 0.413 Cherry Blossom (RSP11330)
  15. 0.412 Unknown--Cherry Wine---001- (RSP11268)
  16. 0.411 RKM-2018-012 (RSP11103)
  17. 0.410 Cherry Blossom (RSP11308)
  18. 0.407 Cherry Blossom (RSP11335)
  19. 0.406 CHEM4 (RSP12090)
  20. 0.404 Cherry Blossom (RSP11333)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349430
Overlapping SNPs:
119
Concordance:
117

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495251
Overlapping SNPs:
8
Concordance:
7

Blockchain Registration Information

Transaction ID
1bbde0762f80d352256bc27b785faba5c9d70c3e5653db502316d873cf5aaa71
Stamping Certificate
Download PDF (858.7 KB)
SHASUM Hash
5f2bb1bb67e86d60337e1fb81c78f2e72ec8f6245fdeb3d34d1a030880d1a4ab
QR code for RSP11036

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