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PK Dried

RSP 13123

Grower: Zamir Punja

General Information

Sample Name
PK Dried-20240416
Accession Date
April 24, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.38%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0222
male female RSP13123

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
AAE1-2

UniProt

c.1434G>T p.Glu478Asp missense variant moderate contig81 210396

IGV: Start, Jump

G/T
NGS:
0.075
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.077 PK (RSP13087)
  2. 0.079 PK (RSP12932)
  3. 0.080 PK Drying (RSP13124)
  4. 0.090 PK (RSP12926)
  5. 0.163 Rugburn OG (RSP11353)
  6. 0.169 The Gift (RSP10988)
  7. 0.171 RKM-2018-012 (RSP11103)
  8. 0.177 Noetic OG (RSP11455)
  9. 0.178 RKM-2018-008 (RSP11099)
  10. 0.179 SFVxTK (RSP11072)
  11. 0.180 RKM-2018-013 (RSP11104)
  12. 0.183 Skywalker OG (RSP10837)
  13. 0.191 East side OG (RSP12089)
  14. 0.192 Elc Grp Drying (RSP13121)
  15. 0.193 Red Eye OG (RSP11190)
  16. 0.206 501st OG (RSP11241)
  17. 0.209 RKM-2018-026 (RSP11118)
  18. 0.209 Deadhead OG (RSP11463)
  19. 0.212 Motor Breath 15 (RSP12093)
  20. 0.214 Pure Power Plant (RSP11265)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
closely related moderately related distantly related
  1. 0.511 Jamaican Lion (RSP12916)
  2. 0.502 Jamaican Lion (RSP12917)
  3. 0.501 Unknown- Cherry Wine - 001 (RSP11268)
  4. 0.495 Jamaican Lion (RSP12915)
  5. 0.489 JL yellow (RSP11075)
  6. 0.489 JL 3rd Gen Mother (RSP11214)
  7. 0.488 Brunswick High (RSP11164)
  8. 0.484 Cherry Blossom (RSP11301)
  9. 0.480 Cherry Blossom (RSP11323)
  10. 0.479 Cherry Blossom (RSP11318)
  11. 0.479 Tanao Sri 46 (RSP11486)
  12. 0.475 JL 4th Gen 4 (RSP11198)
  13. 0.473 Jamaican Lion (RSP12913)
  14. 0.471 JL 4th Gen 5 (RSP11199)
  15. 0.470 JL 4th Gen 1 (RSP11193)
  16. 0.470 Unknown- Cherry Wine - 002 (RSP11269)
  17. 0.469 Unknown- Cherry Wine - 003 (RSP11270)
  18. 0.466 JL 3rd Gen Mother (RSP11197)
  19. 0.465 JL 3rd Gen Father (RSP11196)
  20. 0.464 Swaziland (SRR14708271)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346646
Overlapping SNPs:
69
Concordance:
50

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495266
Overlapping SNPs:
11
Concordance:
11

Blockchain Registration Information

Transaction ID
8d3734100522b89d8c178019f50fc67caaebd051bed2b4794647684a67dd0603
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
4ffc8430887c6b1956b4edb0055414b7cf6481def6aa0c75deb215dc9d8a4a78
QR code for RSP13123

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