Advanced Strain Search

Elc.Grp. Drying

RSP 13121

Grower: Zamir Punja

General Information

Sample Name
Elc.Grp. Drying-20240416
Accession Date
April 24, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.5%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0194
male female RSP13121

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.293A>G p.Asp98Gly missense variant moderate contig976 1083732

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.284A>T p.Glu95Val missense variant moderate contig976 1083741

IGV: Start, Jump

T/A
NGS:
0.053
C90:
0.000
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.416

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.151 PK (RSP12932)
  2. 0.151 PK (RSP13087)
  3. 0.164 PK (RSP12926)
  4. 0.164 PK Drying (RSP13124)
  5. 0.173 RKM-2018-008 (RSP11099)
  6. 0.173 SourD (RSP12092)
  7. 0.175 The Gift (RSP10988)
  8. 0.176 Serious Happiness (RSP10763)
  9. 0.190 Domnesia (RSP11184)
  10. 0.192 RKM-2018-013 (RSP11104)
  11. 0.192 PK Dried (RSP13123)
  12. 0.196 Deadhead OG (RSP11463)
  13. 0.196 Electra (RSP11366)
  14. 0.199 Whitey (RSP11363)
  15. 0.199 Lift (RSP11378)
  16. 0.202 Pearadise x Pineapple Pez Melonade 6 (RSP12978)
  17. 0.202 Pure Power Plant (RSP11265)
  18. 0.203 Skywalker OG (RSP10837)
  19. 0.203 Doug s Varin (RSP11243)
  20. 0.203 SFVxTK (RSP11072)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.465 Cherry Blossom (RSP11323)
  2. 0.448 Tanao Sri 46 (RSP11486)
  3. 0.445 Jamaican Lion (RSP12916)
  4. 0.436 Cherry Blossom (RSP11328)
  5. 0.426 Cherry Blossom (RSP11318)
  6. 0.423 Jamaican Lion (RSP12917)
  7. 0.423 Unknown- Cherry Wine - 001 (RSP11268)
  8. 0.413 Cherry Blossom (RSP11298)
  9. 0.412 JL yellow (RSP11075)
  10. 0.412 Jamaican Lion (RSP12915)
  11. 0.410 80E (RSP11213)
  12. 0.410 Jamaican Lion (RSP12913)
  13. 0.409 Cherry Blossom (RSP11309)
  14. 0.408 Chematonic Cannatonic x Chemdawg (RSP11394)
  15. 0.405 Cherry Blossom (RSP11301)
  16. 0.403 Unknown- Cherry Wine - 003 (RSP11270)
  17. 0.401 Mendo Purps 2 (RSP12799)
  18. 0.401 Cherry Blossom (RSP11274)
  19. 0.400 JL 3rd Gen Mother (RSP11214)
  20. 0.395 Brunswick High (RSP11164)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346714
Overlapping SNPs:
87
Concordance:
56

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495202
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
47cc59b1ba5fc2698e61d1b7f8b62aa374ab88228f9840135aaffb55d25bded6
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
7763c36c88559d89ffef24a3978a3d88bc3335d3ebad18861a629060735d90c8
QR code for RSP13121

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