HARLETSU F3
RSP 12646
Grower: Seattle Chronic Seeds
General Information
- Sample Name
- HTSUF3503B
- Accession Date
- April 27, 2022
- Reported Plant Sex
- Male
- Report Type
- Whole-Genome Sequencing
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSA-3b | c.298G>A | p.Ala100Thr | missense variant | moderate | contig705 | 2271640 | C/T | |
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.2834A>G | p.Asn945Ser | missense variant | moderate | contig2621 | 342877 | A/G |
|
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.554A>G | p.Tyr185Cys | missense variant | moderate | contig700 | 2721119 | T/C |
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
AAE1-1 |
c.696_697dup |
p.Gly233fs | frameshift variant | high | contig606 | 3243573 | C/CCT |
|
AAE1-1 |
c.689_690del |
p.Ser230fs | frameshift variant | high | contig606 | 3243580 | GGC/G |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-2 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 109979 | G/C |
|
FAD2-2 | c.331G>T | p.Glu111* | stop gained | high | contig83 | 1803038 | C/A |
|
FAD2-2 | c.256G>A | p.Gly86Arg | missense variant | moderate | contig83 | 1803113 | C/T |
|
FAD2-2 | c.182T>A | p.Val61Glu | missense variant | moderate | contig83 | 1803187 | A/T |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.153G>T | p.Arg51Ser | missense variant | moderate | contig83 | 1803216 | C/A |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.811G>A | p.Gly271Arg | missense variant | moderate | contig97 | 242517 | G/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1473A>C | p.Lys491Asn | missense variant | moderate | contig97 | 244304 | A/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1807G>C | p.Gly603Arg | missense variant | moderate | contig97 | 244638 | G/C |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.1982A>C | p.Asn661Thr | missense variant | moderate | contig97 | 244813 | A/C |
|
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT4 | c.35A>C | p.Gln12Pro | missense variant | moderate | contig121 | 2828691 | A/C |
|
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.884C>T | p.Thr295Ile | missense variant | moderate | contig81 | 209846 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 |
c.314_315del |
p.Thr105fs | frameshift variant | high | contig1636 | 520601 | CTG/C | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 | c.19C>G | p.Pro7Ala | missense variant | moderate | contig1891 | 889373 | G/C |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1696G>A | p.Val566Met | missense variant | moderate | contig1460 | 1191534 | C/T |
|
PIE1-2 | c.1683A>T | p.Leu561Phe | missense variant | moderate | contig1460 | 1191547 | T/A |
|
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1318A>G | p.Asn440Asp | missense variant | moderate | contig1460 | 1192080 | T/C | |
PIE1-2 | c.1294G>A | p.Asp432Asn | missense variant | moderate | contig1460 | 1192104 | C/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1279G>A | p.Val427Ile | missense variant | moderate | contig1460 | 1192119 | C/T | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.434C>T | p.Ser145Phe | missense variant | moderate | contig954 | 3049270 | C/T | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1742C>G | p.Thr581Ser | missense variant | moderate | contig954 | 3059899 | C/G |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
FLD | c.745A>G | p.Ile249Val | missense variant | moderate | contig1450 | 2047289 | T/C |
|
FLD | c.166A>T | p.Ile56Phe | missense variant | moderate | contig1450 | 2047868 | T/A |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
PIE1-1 | c.1066C>T | p.Arg356Trp | missense variant | moderate | contig1225 | 2281326 | C/T | |
PIE1-1 | c.1120G>A | p.Asp374Asn | missense variant | moderate | contig1225 | 2281380 | G/A |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1249G>T | p.Val417Leu | missense variant | moderate | contig1225 | 2281509 | G/T | |
GGR | c.212G>T | p.Cys71Phe | missense variant | moderate | contig2282 | 549204 | G/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 |
c.1850_1852d |
p.Met617dup | disruptive inframe insertion | moderate | contig93 | 3339945 | A/AGAT |
|
Nearest genetic relatives (All Samples)
- 0.222 Banana Kush (RSP11739)
- 0.227 Liberty Haze (RSP11000)
- 0.232 Arcata Trainwreck (RSP11176)
- 0.238 Electra (RSP11366)
- 0.239 Eagle Scout T-111 (RSP11625)
- 0.240 JL Cross 25 (RSP11526)
- 0.251 OG BSR (RSP12105)
- 0.251 Black 84 (RSP11188)
- 0.252 Serious Happiness (RSP10763)
- 0.255 Lift (RSP11378)
- 0.257 Doug s Varin (RSP11243)
- 0.257 Suver Haze (RSP11364)
- 0.258 North Traveler (RSP11168)
- 0.261 Lifter (RSP11365)
- 0.261 Harlox (RSP11178)
- 0.263 Tahoe OG (RSP11189)
- 0.267 North Traveler (RSP11166)
- 0.268 Joy (RSP11380)
- 0.268 Sour Raspberry (RSP10551)
- 0.268 Liberty Haze (RSP10946)
Most genetically distant strains (All Samples)
- 0.412 Cherry Blossom (RSP11328)
- 0.411 Cherry Blossom (RSP11334)
- 0.407 Northern Skunk (RSP11456)
- 0.401 Cherry Blossom (RSP11317)
- 0.401 80E (RSP11213)
- 0.401 Cherry Blossom (RSP11333)
- 0.400 RKM-2018-026 (RSP11118)
- 0.397 White Label 1 (RSP11336)
- 0.397 JL yellow (RSP11075)
- 0.397 80E (RSP11212)
- 0.395 Tanao Sri-white-T1 (RSP11658)
- 0.393 Northern Lights (RSP11501)
- 0.393 Juicy Gummy x Royal Kush (RSP12484)
- 0.391 Eran Almog (RSP10937)
- 0.390 80E (RSP11211)
- 0.389 Cherry Blossom (RSP11314)
- 0.389 JL 3rd Gen Mother (RSP11214)
- 0.385 Cherry Blossom (RSP11323)
- 0.384 Red Eye OG (RSP11190)
- 0.380 wo wo (RSP11417)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 95
- Concordance:
- 54
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
7a50d298277e8cec
7056bdc419f78de9 5145116c8e904c29 5068b04780b1c38d - SHASUM Hash
-
64fea7828095d317
35121fe5b11f552b 0c2e515d657d6ddb 470c062994fed0af