Advanced Strain Search

UP The Straits

RSP 11260

Grower: UP Farms

General Information

Sample Name
UP the Straits
Accession Date
August 22, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.99%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0500
male female RSP11260

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.177 UP Sunrise (RSP10989)
  2. 0.202 Blue Dream (RSP11004)
  3. 0.202 Blue Dream (RSP11017)
  4. 0.205 Serious Happiness (RSP10763)
  5. 0.210 Up Sunset (RSP11256)
  6. 0.213 Blue Dream (RSP11007)
  7. 0.218 Cheese (RSP10460)
  8. 0.219 Blue Dream (RSP11010)
  9. 0.226 RKM-2018-003 (RSP11094)
  10. 0.227 Super Blue Dream (RSP11011)
  11. 0.227 Joy (RSP11380)
  12. 0.228 Blue Dream (RSP11009)
  13. 0.230 Blue Dream (RSP11006)
  14. 0.230 Blue Dream (RSP11008)
  15. 0.231 Electra (RSP11366)
  16. 0.231 Hindu Kush (SRR14708261)
  17. 0.231 Blue Dream (RSP11012)
  18. 0.232 Italian Kiss (RSP11034)
  19. 0.234 Italian Kiss (RSP10990)
  20. 0.235 UP Green Flash (RSP11259)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.446 Cherry Blossom (RSP11329)
  2. 0.442 Feral (RSP11205)
  3. 0.435 80E (RSP11213)
  4. 0.428 Red Eye OG (RSP11190)
  5. 0.427 Fatso (RSP11741)
  6. 0.425 80E (RSP11212)
  7. 0.424 80E (RSP11211)
  8. 0.423 RKM-2018-026 (RSP11118)
  9. 0.421 Feral (RSP10890)
  10. 0.419 East side OG (RSP12089)
  11. 0.419 Ferimon 12 (SRR14708233)
  12. 0.418 Carmaleonte (RSP11207)
  13. 0.417 GMO x Garlic Breath (RSP12507)
  14. 0.416 Cherry Blossom (RSP11333)
  15. 0.415 Cherry Blossom (RSP11317)
  16. 0.415 Feral (RSP11206)
  17. 0.413 Right Mark (RSP11628)
  18. 0.413 Cherry Blossom CBG (RSP11303)
  19. 0.410 CS Indica (RSP11658)
  20. 0.409 Peanut Butter Breath (RSP11640)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349283
Overlapping SNPs:
72
Concordance:
44

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
4581f60deeb160f8b372ca1bc53308b505f74631cdf55094e85fa2f24112a0c3
Stamping Certificate
Download PDF (853.2 KB)
SHASUM Hash
37ae2635db451e066bce54f8b7f58ccebd36b01a798a63c84d34cc247b102a9b
QR code for RSP11260

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