Advanced Strain Search

Black Scotti

RSP 13470

Grower: kevin Mckernan

General Information

Sample Name
Black Scotti Top Leaves
Accession Date
August 20, 2025
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.07%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0241
male female RSP13470

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.455A>C p.Asp152Ala missense variant moderate contig2621 339191

IGV: Start, Jump

A/C
NGS:
0.018
C90:
0.507
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.746
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.044
C90:
0.622
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.053 Black Scotti (RSP13468)
  2. 0.056 Black Scotti (RSP13471)
  3. 0.061 Black Scotti (RSP13467)
  4. 0.063 Black Scotti (RSP13469)
  5. 0.081 Black Scotti (RSP13466)
  6. 0.266 Styrofoam Cup X Sh3rb3t 2 (RSP13102)
  7. 0.266 Original Diesel (RSP12895)
  8. 0.267 Roze Zkittles x Unknown (RSP12925)
  9. 0.269 Original Sour Diesel (RSP12902)
  10. 0.269 Chem Dog 91 (RSP12905)
  11. 0.277 AJ Sour Diesel (RSP12903)
  12. 0.278 Orange Soda x Styrofoam Cup 2 (RSP13388)
  13. 0.281 T20G (RSP13091)
  14. 0.281 T20H (RSP13092)
  15. 0.286 T20I (RSP13093)
  16. 0.287 PMK 16949 (RSP13110)
  17. 0.288 The Gift (RSP10988)
  18. 0.289 Gorilla Cookies (RSP11231)
  19. 0.289 PMK 16953 (RSP13111)
  20. 0.291 GMO x Poison Momosa (RSP12500)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.481 Chematonic Cannatonic x Chemdawg (RSP11394)
  2. 0.475 UP Sunset (RSP11256)
  3. 0.475 Cherry Blossom (RSP11318)
  4. 0.473 Cherry Blossom (RSP11306)
  5. 0.470 Cherry Blossom (RSP11325)
  6. 0.469 Cherry Blossom (RSP11322)
  7. 0.468 Cherry Blossom (RSP11328)
  8. 0.465 Cherry Blossom (RSP11323)
  9. 0.459 Tanao Sri 46 (RSP11486)
  10. 0.456 Alaska (RSP10939)
  11. 0.454 New York City Deisel (RSP11225)
  12. 0.453 Big Red (RSP13217)
  13. 0.452 Super Lemon Haze (RSP11641)
  14. 0.450 Cherry Blossom (RSP11330)
  15. 0.448 AVIDEKEL 2 0 (RSP11174)
  16. 0.448 Cherry Blossom (RSP11326)
  17. 0.448 Chem 91 (RSP11185)
  18. 0.447 Colombian 8 (SRR14708214)
  19. 0.447 JL Cross 11 (RSP11512)
  20. 0.446 Queen Dream CBG (RSP11287)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346723
Overlapping SNPs:
82
Concordance:
55

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
RSP13470-mgc-ots-certificate
SHASUM Hash
7e5e160c9f11c237e3af48c370717f50f8231e50acbc8be3c1ca5d51b94ecf6b
QR code for RSP13470

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