Advanced Strain Search

Black Scotti

RSP 13466

Grower: kevin Mckernan

General Information

Sample Name
Black Scotti Root
Accession Date
August 20, 2025
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.09%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0276
male female RSP13466

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.2564T>A p.Phe855Tyr missense variant moderate contig2621 342607

IGV: Start, Jump

T/A
NGS:
0.064
C90:
0.732
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.225

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.061 Black Scotti (RSP13468)
  2. 0.062 Black Scotti (RSP13471)
  3. 0.065 Black Scotti (RSP13467)
  4. 0.068 Black Scotti (RSP13469)
  5. 0.081 Black Scotti (RSP13470)
  6. 0.259 Styrofoam Cup X Sh3rb3t 2 (RSP13102)
  7. 0.261 Roze Zkittles x Unknown (RSP12925)
  8. 0.266 Original Sour Diesel (RSP12902)
  9. 0.270 AJ Sour Diesel (RSP12903)
  10. 0.271 Chem Dog 91 (RSP12905)
  11. 0.272 Original Diesel (RSP12895)
  12. 0.272 PMK 16949 (RSP13110)
  13. 0.275 PMK 16953 (RSP13111)
  14. 0.278 Orange Soda x Styrofoam Cup 2 (RSP13388)
  15. 0.283 T20H (RSP13092)
  16. 0.284 T20G (RSP13091)
  17. 0.287 Gary Payton (RSP12898)
  18. 0.288 T20I (RSP13093)
  19. 0.288 Gorilla Cookies (RSP11231)
  20. 0.291 The Gift (RSP10988)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.481 Chematonic Cannatonic x Chemdawg (RSP11394)
  2. 0.477 Cherry Blossom (RSP11325)
  3. 0.477 Cherry Blossom (RSP11306)
  4. 0.476 UP Sunset (RSP11256)
  5. 0.476 Cherry Blossom (RSP11322)
  6. 0.476 Cherry Blossom (RSP11318)
  7. 0.474 Tanao Sri 46 (RSP11486)
  8. 0.469 Cherry Blossom (RSP11323)
  9. 0.468 Cherry Blossom (RSP11328)
  10. 0.460 Queen Dream CBG (RSP11287)
  11. 0.459 Big Red (RSP13217)
  12. 0.458 AVIDEKEL 2 0 (RSP11174)
  13. 0.455 JL Cross 13 (RSP11514)
  14. 0.454 JL Cross 1 (RSP11502)
  15. 0.453 Cherry Blossom (RSP11330)
  16. 0.451 Cherry Blossom (RSP11313)
  17. 0.450 Cherry Blossom (RSP11301)
  18. 0.450 New York City Deisel (RSP11225)
  19. 0.449 Alaska (RSP10939)
  20. 0.449 Super Lemon Haze (RSP11641)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349082
Overlapping SNPs:
77
Concordance:
49

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
RSP13466-mgc-ots-certificate
SHASUM Hash
6ec972ea83ae2fa0bb50107d2fa69d849d988dfb13d1da686228b5511ce22fbd
QR code for RSP13466

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