Advanced Strain Search

Blch-Rt-RW

RSP 13198

Grower: Zamir Punja

General Information

Sample Name
Blch-Rt-RW-20240801
Accession Date
August 7, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.43%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0203
male female RSP13198

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.746
PHL-2 c.2903_2905dupGCA p.Ser968dup disruptive inframe insertion moderate contig2621 342939

IGV: Start, Jump

T/TGCA
NGS:
0.018
C90:
0.522
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
Edestin

UniProt

c.241C>T p.Gln81* stop gained high contig850 3065049

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
FLD

UniProt

c.125G>A p.Ser42Asn missense variant moderate contig1450 2047909

IGV: Start, Jump

C/T
NGS:
0.037
C90:
0.388
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.048 BCP-St-NoMET (RSP13195)
  2. 0.051 BCP St-Fl (RSP13140)
  3. 0.053 BCP Buds (RSP13137)
  4. 0.054 BCP-Lf-NoMET (RSP13191)
  5. 0.057 BCP-St-MET (RSP13194)
  6. 0.058 BCP-Rt-NoMET (RSP13193)
  7. 0.058 BCP-Rt-MET (RSP13192)
  8. 0.059 BCP Rt-Fl (RSP13138)
  9. 0.088 BCP Lf-Fl (RSP13139)
  10. 0.106 BCP Dring (RSP13118)
  11. 0.110 BCP Lf-MET (RSP13190)
  12. 0.121 Blch-Rt-Coco (RSP13197)
  13. 0.151 BCP-Stem-Fl2 (RSP13196)
  14. 0.202 Blch Buds (RSP13134)
  15. 0.204 Blch St-Fl (RSP13136)
  16. 0.205 Blch Rt-Fl (RSP13135)
  17. 0.207 D1 (RSP12875)
  18. 0.239 T20G (RSP13091)
  19. 0.240 T20I (RSP13093)
  20. 0.240 T20H (RSP13092)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.461 Cherry Blossom (RSP11317)
  2. 0.445 Jamaican Lion (RSP12916)
  3. 0.444 Cherry Blossom (RSP11323)
  4. 0.443 JL yellow (RSP11075)
  5. 0.438 JL 3rd Gen Mother (RSP11214)
  6. 0.438 Cherry Blossom (RSP11311)
  7. 0.437 Jamaican Lion (RSP12917)
  8. 0.434 Cherry Blossom (RSP11306)
  9. 0.432 Cherry Blossom (RSP11314)
  10. 0.430 Cherry Blossom (RSP11328)
  11. 0.425 Jamaican Lion (RSP12915)
  12. 0.423 Cherry Blossom (RSP11325)
  13. 0.421 Cherry Blossom (RSP11309)
  14. 0.419 Tiger Tail 30 (RSP11484)
  15. 0.417 Cherry Blossom (RSP11335)
  16. 0.416 Cherry Blossom (RSP11330)
  17. 0.416 Cherry Blossom (RSP11298)
  18. 0.415 Bialobrzeskie (SRR14708244)
  19. 0.415 Unknown- Cherry Wine - 003 (RSP11270)
  20. 0.415 Cherry Blossom (RSP11308)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346729
Overlapping SNPs:
88
Concordance:
56

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495165
Overlapping SNPs:
10
Concordance:
8

Blockchain Registration Information

SHASUM Hash
218fa1b1451d88496539bd99578eed3b5d6f6efdbd71ec34c853ba4beb8131aa
QR code for RSP13198

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