BCP Dring

RSP 13118

Grower: Zamir Punja

General Information

Sample Name
BCP Dring-20240416
Accession Date
April 24, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.22%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0235
male female RSP13118

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.223 D1 (RSP12875)
  2. 0.255 T20I (RSP13093)
  3. 0.259 T20G (RSP13091)
  4. 0.260 T20H (RSP13092)
  5. 0.275 Banana OG (RSP11498)
  6. 0.275 Wedding Cake x MAC (RSP11464)
  7. 0.281 TropCookies (RSP12097)
  8. 0.282 Grape Jelly s (RSP12640)
  9. 0.282 JL Cross 3 (RSP11504)
  10. 0.288 Glueberry OG (RSP11222)
  11. 0.288 Harlox (RSP11178)
  12. 0.288 PG (RSP13088)
  13. 0.289 Permanent Marker (RSP12907)
  14. 0.290 Trump x Trump (RSP11466)
  15. 0.290 PG (RSP12934)
  16. 0.291 RKM-2018-001 (RSP11092)
  17. 0.292 Jerrys Blue Cheese (RSP12729)
  18. 0.292 Mendo Purple (RSP11494)
  19. 0.293 GG 4 (RSP11461)
  20. 0.293 Original Sour Diesel (RSP12902)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.475 Cherry Blossom (RSP11317)
  2. 0.475 Jamaican Lion (RSP12916)
  3. 0.472 JL yellow (RSP11075)
  4. 0.471 JL 3rd Gen Mother (RSP11214)
  5. 0.463 Jamaican Lion (RSP12917)
  6. 0.452 Jamaican Lion (RSP12915)
  7. 0.448 JL 3rd Gen Mother (RSP11197)
  8. 0.447 Cherry Blossom (RSP11311)
  9. 0.444 Cherry Blossom (RSP11314)
  10. 0.444 Cherry Blossom (RSP11328)
  11. 0.443 Cherry Blossom (RSP11306)
  12. 0.442 Cherry Blossom (RSP11325)
  13. 0.442 Cherry Blossom (RSP11323)
  14. 0.438 Cherry Blossom (RSP11309)
  15. 0.436 JL 4th Gen 1 (RSP11193)
  16. 0.436 Unknown- Cherry Wine - 003 (RSP11270)
  17. 0.435 JL x NSPM1 4 (RSP11482)
  18. 0.435 Cherry Blossom (RSP11298)
  19. 0.434 AVIDEKEL USA (RSP11169)
  20. 0.430 Cherry Blossom CBG (RSP11303)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346423
Overlapping SNPs:
85
Concordance:
53

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495165
Overlapping SNPs:
10
Concordance:
7

Blockchain Registration Information

Transaction ID
9bcdd913f2c198f38e17c63badecfa7858f8908538fc23aa913925208ad34166
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
8c45deeaac5a588c9b64d3fab6474603e370c808a64c84ef48d43df283c823db
QR code for RSP13118

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