Advanced Strain Search

BCP Lf-MET

RSP 13190

Grower: Zamir Punja

General Information

Sample Name
BCP Lf-MET-20240730
Accession Date
August 7, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.99%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0291
male female RSP13190

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
AAE1-1

UniProt

c.456delA p.Gly153fs frameshift variant high contig606 3243814

IGV: Start, Jump

CT/C
NGS:
0.000
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
FLD

UniProt

c.125G>A p.Ser42Asn missense variant moderate contig1450 2047909

IGV: Start, Jump

C/T
NGS:
0.037
C90:
0.388
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.088
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.087 BCP-St-NoMET (RSP13195)
  2. 0.088 BCP St-Fl (RSP13140)
  3. 0.091 BCP-Lf-NoMET (RSP13191)
  4. 0.092 BCP Buds (RSP13137)
  5. 0.093 BCP-St-MET (RSP13194)
  6. 0.094 BCP Lf-Fl (RSP13139)
  7. 0.097 BCP-Rt-NoMET (RSP13193)
  8. 0.097 BCP Rt-Fl (RSP13138)
  9. 0.098 BCP-Rt-MET (RSP13192)
  10. 0.110 Blch-Rt-RW (RSP13198)
  11. 0.122 BCP Dring (RSP13118)
  12. 0.145 Blch-Rt-Coco (RSP13197)
  13. 0.191 BCP-Stem-Fl2 (RSP13196)
  14. 0.230 Blch Buds (RSP13134)
  15. 0.232 Blch St-Fl (RSP13136)
  16. 0.232 Blch Rt-Fl (RSP13135)
  17. 0.232 D1 (RSP12875)
  18. 0.274 PG Buds (RSP13151)
  19. 0.275 T20G (RSP13091)
  20. 0.275 T20H (RSP13092)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.486 Cherry Blossom (RSP11317)
  2. 0.463 Cherry Blossom (RSP11311)
  3. 0.458 Cherry Blossom (RSP11314)
  4. 0.456 Cherry Blossom (RSP11323)
  5. 0.451 Cherry Blossom (RSP11328)
  6. 0.448 Cherry Blossom (RSP11335)
  7. 0.446 Cherry Blossom (RSP11308)
  8. 0.446 Cherry Blossom (RSP11306)
  9. 0.446 Cherry Blossom (RSP11298)
  10. 0.445 Cherry Blossom (RSP11330)
  11. 0.441 Cherry Blossom (RSP11309)
  12. 0.439 Cherry Blossom (RSP11324)
  13. 0.437 Unknown- Cherry Wine - 003 (RSP11270)
  14. 0.437 Cherry Blossom (RSP11312)
  15. 0.437 Cherry Blossom (RSP11325)
  16. 0.435 Cherry Blossom (RSP11333)
  17. 0.435 Tiger Tail 30 (RSP11484)
  18. 0.435 Cherry Blossom (RSP11334)
  19. 0.433 CS (RSP11208)
  20. 0.433 Tanao Sri-white-T1 (RSP11658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346729
Overlapping SNPs:
87
Concordance:
57

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495277
Overlapping SNPs:
14
Concordance:
12

Blockchain Registration Information

SHASUM Hash
31c8d9aa3a5d712d935ec3b93ca5705cfde1848ea578d197d7b2630b7a304f0c
QR code for RSP13190

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