Advanced Strain Search

A29-Lf-M-Rw

RSP 13187

Grower: Zamir Punja

General Information

Sample Name
A29-Lf-M-Rw-20240730
Accession Date
August 7, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.59%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0155
male female RSP13187

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
EMF1-2

UniProt

c.2256A>T p.Lys752Asn missense variant moderate contig885 3142

IGV: Start, Jump

A/T
NGS:
0.026
C90:
0.000
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
DXR-1

UniProt

c.658delA p.Ile220fs frameshift variant high contig380 233838

IGV: Start, Jump

AT/A
NGS:
0.000
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
ELF5

UniProt

c.1162A>G p.Thr388Ala missense variant moderate contig382 881132

IGV: Start, Jump

A/G
NGS:
0.011
C90:
0.033
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
TFL1

UniProt

c.314_315delCA p.Thr105fs frameshift variant high contig1636 520601

IGV: Start, Jump

CTG/C
NGS:
0.004
C90:
0.057
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1393G>A p.Ala465Thr missense variant & splice region variant moderate contig1891 886355

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.091
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
EMF1-1

UniProt

c.62C>G p.Thr21Ser missense variant moderate contig883 268910

IGV: Start, Jump

C/G
NGS:
0.007
C90:
0.000
FT

UniProt

c.13C>G p.Leu5Val missense variant moderate contig1561 3124437

IGV: Start, Jump

C/G
NGS:
0.031
C90:
0.153
FLD

UniProt

c.2929T>C p.Phe977Leu missense variant moderate contig1450 2044103

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.349

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.086 A29-St-M-Rw (RSP13189)
  2. 0.097 A29-Rt-M-Rw (RSP13188)
  3. 0.186 Domnesia (RSP11184)
  4. 0.199 Electra (RSP11366)
  5. 0.204 Glitter Bomb (RSP12901)
  6. 0.205 JFG (RSP13085)
  7. 0.206 PD Lf-M (RSP13150)
  8. 0.207 PD St-M (RSP13149)
  9. 0.213 Tahoe OG (RSP11189)
  10. 0.213 JL X NSPM1 7 (RSP11469)
  11. 0.215 SHERBERT (RSP11355)
  12. 0.215 Lift (RSP11378)
  13. 0.215 Serious Happiness (RSP10763)
  14. 0.216 Permanent Marker (RSP12907)
  15. 0.219 Rest (RSP11377)
  16. 0.219 JFG (RSP12927)
  17. 0.219 Old Family Purple (RSP12098)
  18. 0.222 Mendo Purple (RSP11494)
  19. 0.222 Blueberry Cheesecake (RSP10684)
  20. 0.223 SLH Rt-Fl (RSP13133)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.435 Northern Skunk (RSP11456)
  2. 0.419 Jamaican Lion (RSP12916)
  3. 0.412 80E (RSP11213)
  4. 0.410 Cherry Blossom (RSP11323)
  5. 0.403 Jamaican Lion (RSP12913)
  6. 0.401 JL yellow (RSP11075)
  7. 0.398 Cherry Blossom (RSP11328)
  8. 0.393 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  9. 0.392 Jamaican Lion (RSP12917)
  10. 0.390 BCH Rt-Fl (RSP13141)
  11. 0.390 R1in136 (SRR14708227)
  12. 0.388 R1in136 (SRR14708237)
  13. 0.388 Candy Kush (RSP11492)
  14. 0.387 80E (RSP11212)
  15. 0.387 Cherry Blossom (RSP11317)
  16. 0.386 R1in136 (SRR14708226)
  17. 0.385 Bialobrzeskie (SRR14708244)
  18. 0.384 Cherry Blossom (RSP11309)
  19. 0.384 Ruderalis Indica (SRR14708267)
  20. 0.383 80E (RSP11211)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346765
Overlapping SNPs:
91
Concordance:
62

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495192
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

SHASUM Hash
d8ffecb8bfa37de5722bfdc3c7208895bcf4508729a6e7979331afab7fe7a45e
QR code for RSP13187

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