Advanced Strain Search

JL x MC7

RSP 13213

Grower: kevin Mckernan

General Information

Sample Name
JL x MC7-Flower
Accession Date
September 11, 2024
Reported Plant Sex
Female
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.95%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0180
male female RSP13213

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.096
C90:
0.555
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
ELF5

UniProt

c.853C>T p.Pro285Ser missense variant moderate contig382 880715

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.153
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.044
C90:
0.622
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000
AAE1-3

UniProt

c.722G>A p.Arg241Lys missense variant moderate contig976 1083132

IGV: Start, Jump

C/T
NGS:
0.070
C90:
0.000
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.088
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.151 JL x MandarinCookies XX THC 5 (RSP13167)
  2. 0.156 JL x MC5 (RSP13212)
  3. 0.162 JL x MandarinCookies XX THC 10 (RSP13168)
  4. 0.163 JL yellow (RSP11075)
  5. 0.168 Jamaican Lion (RSP12917)
  6. 0.171 JL 3rd Gen Mother (RSP11214)
  7. 0.174 Jamaican Lion (RSP12915)
  8. 0.174 JL 3rd Gen Mother (RSP11197)
  9. 0.178 JL 4th Gen 2 (RSP11194)
  10. 0.182 JL 4th Gen 4 (RSP11198)
  11. 0.186 JL 4th Gen 1 (RSP11193)
  12. 0.188 JL 4th Gen 5 (RSP11199)
  13. 0.188 Jamaican Lion (RSP12916)
  14. 0.191 JL 4th Gen 3 (RSP11195)
  15. 0.199 Jamaican Lions Ancestor (RSP11127)
  16. 0.225 JL 4th Gen 7 (RSP11153)
  17. 0.238 Jamaican Lion (RSP12913)
  18. 0.238 Jamaican Lion (RSP12920)
  19. 0.239 Jamaican Lion (RSP12918)
  20. 0.241 Jamaican Lion (RSP12919)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
closely related moderately related distantly related
  1. 0.552 BCH Rt-Fl (RSP13141)
  2. 0.488 PK Dried (RSP13123)
  3. 0.475 Fatso (RSP11741)
  4. 0.472 Chem 91 (RSP11185)
  5. 0.471 CS (RSP11208)
  6. 0.471 Feral (RSP11205)
  7. 0.470 Red Eye OG (RSP11190)
  8. 0.469 Cherry Blossom (RSP11317)
  9. 0.468 GMO x Poison Momosa (RSP12626)
  10. 0.467 T20 Dried (RSP13125)
  11. 0.466 Purple Urkle (RSP12890)
  12. 0.464 Rainbow Belts 3 0 11 (RSP12801)
  13. 0.463 Badger G (RSP13082)
  14. 0.463 Rainbow Belts 1 0 (RSP12911)
  15. 0.462 Cherry Blossom (RSP11324)
  16. 0.461 Cherry Blossom (RSP11333)
  17. 0.460 80E (RSP11213)
  18. 0.457 PK Drying (RSP13124)
  19. 0.456 JL Cross 6 (RSP11507)
  20. 0.452 PK (RSP13087)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346959
Overlapping SNPs:
95
Concordance:
56

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495228
Overlapping SNPs:
10
Concordance:
8

Blockchain Registration Information

SHASUM Hash
5e6be3f6c056852dab6b95df51f1b5fbb66a89fcdac3c26adc7528982ac4e762
QR code for RSP13213

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