Advanced Strain Search

R2

RSP 11615

Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute

General Information

Sample Name
CS Sativa
Accession Date
July 20, 2020
Reported Plant Sex
not reported
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.43%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0976
male female RSP11615

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.083
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.030
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.304
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.411
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.387
C90:
0.876
PKSG-2a

UniProt

c.-2_1delATA p.Met1del start lost & conservative inframe deletion high contig700 1945632

IGV: Start, Jump

ATAT/A
NGS:
0.008
C90:
0.000
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.372
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.204
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.409
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.767
C90:
0.880
PKSG-4b

UniProt

c.557+2T>C splice donor variant & intron variant high contig700 2721114

IGV: Start, Jump

A/G
NGS:
0.004
C90:
0.000
PKSG-4b

UniProt

c.554A>G p.Tyr185Cys missense variant moderate contig700 2721119

IGV: Start, Jump

T/C
NGS:
0.005
C90:
0.000
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.523
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.357
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.454
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.337
C90:
0.000
FAD2-2

UniProt

c.154G>A p.Val52Ile missense variant moderate contig83 1803215

IGV: Start, Jump

C/T
NGS:
0.031
C90:
0.000
FAD2-2

UniProt

c.137G>A p.Gly46Glu missense variant moderate contig83 1803232

IGV: Start, Jump

C/T
NGS:
0.001
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.189
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.190
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.153
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.149
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.582
C90:
0.761
aPT1

UniProt

c.574A>T p.Met192Leu missense variant moderate contig121 2840182

IGV: Start, Jump

A/T
NGS:
0.016
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.525
C90:
0.598
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.081
C90:
0.100
aPT1

UniProt

c.766T>C p.Tyr256His missense variant moderate contig121 2841545

IGV: Start, Jump

T/C
NGS:
0.003
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.544
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.522
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.188 R1 (RSP11483)
  2. 0.198 Tak-HN (RSP11618)
  3. 0.216 R4 (RSP11617)
  4. 0.216 R3 (RSP11616)
  5. 0.233 YNN (SRR14708199)
  6. 0.238 GXI (SRR14708198)
  7. 0.241 SCN (SRR14708201)
  8. 0.242 KYRG-151 (RSP11052)
  9. 0.244 IUL2 (SRR14708253)
  10. 0.246 Tisza (RSP10659)
  11. 0.248 IUL3 (SRR14708252)
  12. 0.249 Jiangji (RSP10653)
  13. 0.250 QHI (SRR14708202)
  14. 0.250 KYRG-11 (RSP11051)
  15. 0.254 IUL1 (SRR14708254)
  16. 0.256 IMA (SRR14708203)
  17. 0.257 IBR3 (SRR14708249)
  18. 0.257 Kyrgyz Gold (RSP11054)
  19. 0.258 IBR2 (SRR14708250)
  20. 0.261 KYRG-21 (RSP11053)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.465 Cherry Blossom (RSP11318)
  2. 0.436 Cherry Blossom (RSP11323)
  3. 0.422 Chem 91 (RSP11185)
  4. 0.418 Cherry Blossom (RSP11300)
  5. 0.415 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  6. 0.415 Cherry Blossom (RSP11328)
  7. 0.415 Cherry Blossom (RSP11312)
  8. 0.414 Cherry Blossom (RSP11301)
  9. 0.412 Cherry Blossom (RSP11331)
  10. 0.410 GG4 (RSP11978)
  11. 0.410 Unknown--Cherry Wine---001- (RSP11268)
  12. 0.408 QLE1 (RSP11451)
  13. 0.407 AVIDEKEL 2 0 (RSP11174)
  14. 0.404 Wilburs Great Adventure (RSP11727)
  15. 0.404 Cherry Blossom (RSP11302)
  16. 0.404 Wife (RSP11148)
  17. 0.403 QQD2 (RSP11450)
  18. 0.402 B52 (SRR14708255)
  19. 0.401 Medxotic (RSP11410)
  20. 0.401 Cherry Blossom (RSP11322)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450096
Overlapping SNPs:
86
Concordance:
49

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495251
Overlapping SNPs:
3
Concordance:
2

Blockchain Registration Information

SHASUM Hash
902d18c983d9ded6620aeefcc8845003f2e779d718e94600ee2a091fc1e2deba
QR code for RSP11615

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings