Advanced Strain Search

KYRG-11

RSP 11051

Grower: Landrace kyrgyzstan

General Information

Sample Name
Kxrgyz-L3
Accession Date
February 5, 2018
Reported Plant Sex
not reported
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.09%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0631
male female RSP11051

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
aPT4

UniProt

c.626A>G p.Asn209Ser missense variant moderate contig121 2830904

IGV: Start, Jump

A/G
NGS:
0.035
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.209 KYRG-151 (RSP11052)
  2. 0.215 Kyrgyz Gold (RSP11054)
  3. 0.216 Tygra (RSP10667)
  4. 0.217 Santhica27 (RSP10056)
  5. 0.218 Carmagnola (RSP10982)
  6. 0.219 XUM2 (SRR14708204)
  7. 0.221 Carmagnola (RSP10979)
  8. 0.224 Carmagnola (RSP11039)
  9. 0.225 KYRG-21 (RSP11053)
  10. 0.227 Carmagnola (RSP10655)
  11. 0.227 Futura 75 (RSP10664)
  12. 0.228 Carmagnola (RSP10978)
  13. 0.229 USO 31 (RSP10983)
  14. 0.229 Santhica 27 (RSP10665)
  15. 0.232 Tisza (RSP10659)
  16. 0.232 XHC2 (SRR14708210)
  17. 0.235 Lovrin (RSP10658)
  18. 0.235 Carmagnola (RSP10980)
  19. 0.236 C-930 lot 211005 (RSP12603)
  20. 0.237 QHI (SRR14708202)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.434 Cherry Blossom (RSP11323)
  2. 0.434 Cherry Blossom (RSP11318)
  3. 0.427 Cherry Blossom (RSP11301)
  4. 0.423 Chem 91 (RSP11185)
  5. 0.421 Cherry Blossom (RSP11312)
  6. 0.418 Cherry Blossom (RSP11311)
  7. 0.415 Cherry Blossom (RSP11298)
  8. 0.415 Cherry Blossom (RSP11328)
  9. 0.412 Unknown--Cherry Wine---001- (RSP11268)
  10. 0.408 Cherry Blossom (RSP11300)
  11. 0.403 BagSeed (RSP12627)
  12. 0.401 Cherry Blossom (RSP11334)
  13. 0.398 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  14. 0.398 Cherry Blossom (RSP11319)
  15. 0.397 Cherry Blossom (RSP11309)
  16. 0.397 Cherry Blossom (RSP11321)
  17. 0.396 Cherry Blossom (RSP11331)
  18. 0.395 QLE1 (RSP11451)
  19. 0.393 Northern Lights (RSP11501)
  20. 0.391 GMO x Garlic Breath (RSP12507)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448704
Overlapping SNPs:
69
Concordance:
43

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495164
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
8925ec04fd2ae2a49643dfb7df0a859fc90229622e2c6d1f026c87caead6f074
Stamping Certificate
Download PDF (854.0 KB)
SHASUM Hash
592c7de2979ddbcf63eadd52a170f74252c5737fd28154286cd05707eb0be1f8
QR code for RSP11051

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