PK-Rt-RW
RSP 13204
Grower: Zamir Punja
General Information
- Sample Name
- PK-Rt-RW-20240801
- Accession Date
- August 7, 2024
- Reported Plant Sex
- Female
- Report Type
- Whole-Genome Sequencing
- Microbiome
- Krona Plot
- Fungal Microbiome
- Krona Plot
- Bacterial Microbiome
- Krona Plot
- Viral Microbiome
- Krona Plot
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gender/rsp13204-gender-y-ratio.png)
This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp13204-gene-depth-active-cbdas.png)
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp13204-gene-depth-active-thcas.png)
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp13204-gene-depth-inactive-cbdas.png)
This chart represents the Illumina sequence coverage over the CBCA synthase gene.
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp13204-gene-depth-cbcas.png)
Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.884C>T | p.Thr295Ile | missense variant | moderate | contig81 | 209846 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.561delT | p.Met189fs | frameshift variant | high | contig1439 | 1490801 | TA/T |
|
Edestin | c.17C>T | p.Ser6Leu | missense variant | moderate | contig850 | 3065273 | G/A |
|
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.501G>C | p.Leu167Phe | missense variant | moderate | contig976 | 1083524 | C/G |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PKSB-3 |
c.1844_1845i |
p.Met614_Met |
disruptive inframe insertion | moderate | contig93 | 3339949 | G/GATA |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.024 PK Buds (RSP13153)
- 0.026 PK-St-M (RSP13205)
- 0.027 PK-Lf-M (RSP13201)
- 0.028 PK St-Fl (RSP13155)
- 0.030 PK (RSP13087)
- 0.031 PK (RSP12932)
- 0.038 PK Rt-Fl (RSP13154)
- 0.042 PK Drying (RSP13124)
- 0.043 PK-Rt-BioG- (RSP13200)
- 0.045 PK-Rt-Coco (RSP13202)
- 0.048 PK-Rt-M (RSP13203)
- 0.051 PK (RSP12926)
- 0.080 PK Dried (RSP13123)
- 0.127 RKM-2018-008 (RSP11099)
- 0.131 The Gift (RSP10988)
- 0.137 Rugburn OG (RSP11353)
- 0.138 RKM-2018-013 (RSP11104)
- 0.152 DP Dried (RSP13143)
- 0.153 Noetic OG (RSP11455)
- 0.153 SFVxTK (RSP11072)
Most genetically distant strains (All Samples)
- 0.482 Unknown- Cherry Wine - 001 (RSP11268)
- 0.477 Jamaican Lion (RSP12916)
- 0.473 Brunswick High (RSP11164)
- 0.469 Cherry Blossom (RSP11301)
- 0.469 Tanao Sri 46 (RSP11486)
- 0.468 Cherry Blossom (RSP11323)
- 0.467 Cherry Blossom (RSP11318)
- 0.465 Jamaican Lion (RSP12917)
- 0.453 Jamaican Lion (RSP12915)
- 0.453 Unknown- Cherry Wine - 002 (RSP11269)
- 0.448 Unknown- Cherry Wine - 003 (RSP11270)
- 0.444 Jamaican Lion (RSP12913)
- 0.444 JL yellow (RSP11075)
- 0.442 JL 3rd Gen Father (RSP11196)
- 0.440 Cherry Blossom (RSP11306)
- 0.440 Cherry Blossom (RSP11328)
- 0.439 JL Cross 25 (RSP11526)
- 0.439 Cherry Blossom (RSP11300)
- 0.438 JL 4th Gen 5 (RSP11199)
- 0.437 Cherry Blossom (RSP11298)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 92
- Concordance:
- 66
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- SHASUM Hash
-
10378c98322667fd
a252a0e65023841d fa8db9f5345088aa d05d5107b489f29e