Advanced Strain Search

Swag Trinidat, by Kaly

RSP 12876

Grower: Max Montrose

General Information

Accession Date
March 22, 2023
Reported Plant Sex
Not Reported
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
9.54%
CBD + CBDA
0.%
THCV + THCVA
n/a
CBC + CBCA
0.18%
CBG + CBGA
1.35%
CBN + CBNA
n/a

Terpenoids

No information provided.

Genetic Information

Plant Type
Unknown

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0389
male female RSP12876

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
GPPs1

UniProt

c.160A>G p.Lys54Glu missense variant moderate contig676 168409

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.000
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
ELF3

UniProt

c.752G>T p.Gly251Val missense variant moderate contig97 242458

IGV: Start, Jump

G/T
NGS:
0.022
C90:
0.139
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF5

UniProt

c.1162A>G p.Thr388Ala missense variant moderate contig382 881132

IGV: Start, Jump

A/G
NGS:
0.011
C90:
0.033
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
AAE1-3

UniProt

c.659G>A p.Arg220Gln missense variant moderate contig976 1083195

IGV: Start, Jump

C/T
NGS:
0.077
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.083 0.167 0.250 0.333
closely related moderately related distantly related
  1. 0.234 80E (RSP11212)
  2. 0.237 80E (RSP11213)
  3. 0.246 80E (RSP11211)
  4. 0.307 Blue Dream (RSP11010)
  5. 0.307 Miss X (RSP10999)
  6. 0.308 Recon (RSP10755)
  7. 0.317 UP Sunrise (RSP10989)
  8. 0.318 T2R15 (RSP12661)
  9. 0.318 Liberty Haze (RSP11000)
  10. 0.318 Blue Dream (RSP11017)
  11. 0.320 Black Jack (RSP10603)
  12. 0.320 T4R4 (RSP12663)
  13. 0.320 Blue Dream (RSP11009)
  14. 0.320 CST (RSP11002)
  15. 0.321 IUL2 (SRR14708253)
  16. 0.321 Blueberry Cheesecake (RSP10684)
  17. 0.322 Serious Happiness (RSP10763)
  18. 0.322 IUL3 (SRR14708252)
  19. 0.322 Liberty Haze (RSP10946)
  20. 0.323 Blue Dream (RSP11008)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.465 Cherry Blossom (RSP11318)
  2. 0.459 Cherry Blossom (RSP11328)
  3. 0.452 Cherry Blossom (RSP11323)
  4. 0.449 Cherry Blossom (RSP11300)
  5. 0.447 Unknown- Cherry Wine - 001 (RSP11268)
  6. 0.443 Chem 91 (RSP11185)
  7. 0.437 Cherry Blossom (RSP11325)
  8. 0.436 Cherry Blossom (RSP11312)
  9. 0.436 CHEM4 (RSP12090)
  10. 0.434 GG4 (RSP11978)
  11. 0.432 Cherry Blossom (RSP11301)
  12. 0.432 CBD2 V 2 (RSP12669)
  13. 0.429 Cherry Blossom (RSP11311)
  14. 0.429 Fatso (RSP11741)
  15. 0.427 Motor Breath 15 (RSP12093)
  16. 0.426 Cherry Blossom (RSP11331)
  17. 0.426 Cherry Blossom (RSP11332)
  18. 0.426 Hot Blonde (RSP11292)
  19. 0.426 QLE1 (RSP11451)
  20. 0.424 Cherry Blossom (RSP11314)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
8
Concordance:
6

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495251
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
35aa64939e4fab57b0fcfe7c43107437ce44409526dc341fe3c21632b820fada
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
ea74a484fb06ace856536b01063ab147030acc80ac58c0ae8583b1f1b5a67a79
QR code for RSP12876

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