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JL Cross 50

RSP 11551

Grower: Kevin McKernan

General Information

Accession Date
June 21, 2020
Reported Plant Sex
not reported
Report Type
CannSNP90

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

This chart represents the Log-R Ratio (LRR) over variants in the region of the THCA synthase gene. A high correlation between the LRR and samples with a known deletion in THCA synthase indicates the THCA region is deleted and a low correlation indicates it is intact.

THCAS Log-R Ratio
intact deleted RSP11551

This chart represents the Log-R Ratio (LRR) over variants in the region of the CBDA synthase gene. A high correlation between the LRR and samples with a known deletion in CBDA synthase indicates the CBDA region is deleted and a low correlation indicates it is intact.

CBDAS Log-R Ratio
intact deleted RSP11551

This chart represents the Log-R Ratio (LRR) over variants in the region of the CBCA synthase gene. A high correlation between the LRR and samples with a known deletion in CBCA synthase indicates the CBCA region is deleted and a low correlation indicates it is intact.

CBCAS Log-R Ratio
intact deleted RSP11551

This chart represents the Log-R Ratio (LRR) over variants in the Y-contigs. A high correlation between the LRR and samples which are known Females indicates these Y-contigs are deleted in this sample and a low correlation indicates that the Y-contigs are not deleted and is likely Male.

Plant Sex Log-R Ratio
male female RSP11551

Summary of Deletions

THCAS

Correlation:
0.43
Call:
intact

CBDAS

Correlation:
0.2
Call:
intact

CBCAS

Correlation:
-0.14
Call:
intact

Plant Sex

Correlation:
0.06
Call:
male

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.242C>A p.Pro81Gln missense variant moderate contig1772 2082468

IGV: Start, Jump

C/A
NGS:
0.155
C90:
0.675
CBDAS c.407G>A p.Arg136His missense variant moderate contig1772 2082633

IGV: Start, Jump

G/A
NGS:
0.282
C90:
1.000
CBDAS c.538T>A p.Cys180Ser missense variant moderate contig1772 2082764

IGV: Start, Jump

T/A
NGS:
0.188
C90:
0.732
CBDAS c.545G>C p.Gly182Ala missense variant moderate contig1772 2082771

IGV: Start, Jump

G/C
NGS:
0.194
C90:
0.775
CBDAS c.637C>G p.His213Asp missense variant moderate contig1772 2082863

IGV: Start, Jump

C/G
NGS:
0.189
C90:
0.699
CBDAS c.688T>A p.Leu230Ile missense variant moderate contig1772 2082914

IGV: Start, Jump

T/A
NGS:
0.194
C90:
0.722
CBDAS c.704C>G p.Ala235Gly missense variant moderate contig1772 2082930

IGV: Start, Jump

C/G
NGS:
0.197
C90:
0.766
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.267
C90:
0.813
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.399
C90:
0.632
THCAS c.424G>A p.Val142Ile missense variant moderate contig741 4417404

IGV: Start, Jump

C/T
NGS:
0.222
C90:
0.761
THCAS c.385G>A p.Val129Ile missense variant moderate contig741 4417443

IGV: Start, Jump

C/T
NGS:
0.256
C90:
0.947
THCAS c.355A>T p.Met119Leu missense variant moderate contig741 4417473

IGV: Start, Jump

T/A
NGS:
0.274
C90:
0.962
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.233
C90:
0.679

Variants (Select Genes of Interest)
PHL-2 c.455A>C p.Asp152Ala missense variant moderate contig2621 339191

IGV: Start, Jump

A/C
NGS:
0.239
C90:
0.507
PHL-2 c.2564T>A p.Phe855Tyr missense variant moderate contig2621 342607

IGV: Start, Jump

T/A
NGS:
0.483
C90:
0.732
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.486
C90:
0.746
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.409
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.611
C90:
0.890
PHL-2 c.2903_2905dupGCA p.Ser968dup disruptive inframe insertion moderate contig2621 342939

IGV: Start, Jump

T/TGCA
NGS:
0.239
C90:
0.522
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.599
C90:
0.885
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.487
C90:
0.713
PKSG-4a

UniProt

c.1000T>C p.Tyr334His missense variant moderate contig700 1938411

IGV: Start, Jump

T/C
NGS:
0.253
C90:
0.804
PKSG-2a

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1944238

IGV: Start, Jump

A/T
NGS:
0.250
C90:
0.880
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.318
C90:
0.967
PKSG-2a

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1944395

IGV: Start, Jump

G/A
NGS:
0.166
C90:
0.598
PKSG-2a

UniProt

c.781T>A p.Leu261Ile missense variant moderate contig700 1944609

IGV: Start, Jump

A/T
NGS:
0.180
C90:
0.574
PKSG-2a

UniProt

c.623T>C p.Phe208Ser missense variant moderate contig700 1944767

IGV: Start, Jump

A/G
NGS:
0.164
C90:
0.598
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.304
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.411
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.387
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.372
C90:
0.895
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.409
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.488
C90:
0.947
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.305
C90:
0.957
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.294
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.767
C90:
0.880
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.157
C90:
0.325
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.513
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.649
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.438
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.523
C90:
0.679
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.351
C90:
0.689
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.437
C90:
0.550
OAC-2

UniProt

c.220A>G p.Ile74Val missense variant moderate contig931 110019

IGV: Start, Jump

T/C
NGS:
0.174
C90:
0.670
OAC-1

UniProt

c.220A>G p.Ile74Val missense variant moderate contig931 118144

IGV: Start, Jump

T/C
NGS:
0.224
C90:
0.670
ELF3

UniProt

c.574A>G p.Asn192Asp missense variant moderate contig97 242280

IGV: Start, Jump

A/G
NGS:
0.251
C90:
0.579
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.649
C90:
0.938
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.082
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.582
C90:
0.761
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.172
C90:
0.622
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.165
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.563
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.570
C90:
0.904
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.484
C90:
0.794
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.584
C90:
0.861
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.648
C90:
0.943
PIE1-2

UniProt

c.6773T>C p.Leu2258Ser missense variant moderate contig1460 1184314

IGV: Start, Jump

A/G
NGS:
0.313
C90:
0.675
PIE1-2

UniProt

c.6653A>G p.Asn2218Ser missense variant moderate contig1460 1184434

IGV: Start, Jump

T/C
NGS:
0.365
C90:
0.928
PIE1-2

UniProt

c.6636T>G p.Asp2212Glu missense variant moderate contig1460 1184451

IGV: Start, Jump

A/C
NGS:
0.294
C90:
0.885
PIE1-2

UniProt

c.6623C>T p.Ala2208Val missense variant moderate contig1460 1184464

IGV: Start, Jump

G/A
NGS:
0.281
C90:
0.689
PIE1-2

UniProt

c.6307A>C p.Lys2103Gln missense variant moderate contig1460 1185177

IGV: Start, Jump

T/G
NGS:
0.176
C90:
0.679
PIE1-2

UniProt

c.6055C>T p.Leu2019Phe missense variant moderate contig1460 1185429

IGV: Start, Jump

G/A
NGS:
0.182
C90:
0.469
PIE1-2

UniProt

c.5132T>C p.Ile1711Thr missense variant moderate contig1460 1186607

IGV: Start, Jump

A/G
NGS:
0.257
C90:
0.852
PIE1-2

UniProt

c.3512A>G p.Lys1171Arg missense variant moderate contig1460 1188528

IGV: Start, Jump

T/C
NGS:
0.192
C90:
0.670
PIE1-2

UniProt

c.2083_2085delGTC p.Val695del conservative inframe deletion moderate contig1460 1189954

IGV: Start, Jump

GGAC/G
NGS:
0.318
C90:
0.880
PIE1-2

UniProt

c.2072A>G p.His691Arg missense variant moderate contig1460 1189968

IGV: Start, Jump

T/C
NGS:
0.280
C90:
0.789
PIE1-2

UniProt

c.1872T>A p.Asp624Glu missense variant moderate contig1460 1190252

IGV: Start, Jump

A/T
NGS:
0.460
C90:
0.990
PIE1-2

UniProt

c.1630G>C p.Ala544Pro missense variant moderate contig1460 1191600

IGV: Start, Jump

C/G
NGS:
0.386
C90:
0.933
PIE1-2

UniProt

c.1156T>G p.Trp386Gly missense variant moderate contig1460 1192242

IGV: Start, Jump

A/C
NGS:
0.311
C90:
0.976
PIE1-2

UniProt

c.1117C>G p.Gln373Glu missense variant moderate contig1460 1192281

IGV: Start, Jump

G/C
NGS:
0.264
C90:
0.818
PIE1-2

UniProt

c.1093G>A p.Gly365Ser missense variant moderate contig1460 1192305

IGV: Start, Jump

C/T
NGS:
0.293
C90:
0.986
PIE1-2

UniProt

c.982G>A p.Glu328Lys missense variant moderate contig1460 1192416

IGV: Start, Jump

C/T
NGS:
0.342
C90:
0.976
PIE1-2

UniProt

c.710C>T p.Pro237Leu missense variant moderate contig1460 1193804

IGV: Start, Jump

G/A
NGS:
0.415
C90:
0.866
PIE1-2

UniProt

c.706T>C p.Tyr236His missense variant moderate contig1460 1193808

IGV: Start, Jump

A/G
NGS:
0.342
C90:
0.737
PIE1-2

UniProt

c.637T>A p.Ser213Thr missense variant moderate contig1460 1194421

IGV: Start, Jump

A/T
NGS:
0.397
C90:
0.885
PIE1-2

UniProt

c.349C>T p.Pro117Ser missense variant & splice region variant moderate contig1460 1195017

IGV: Start, Jump

G/A
NGS:
0.265
C90:
0.962
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.584
C90:
0.876
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.165
C90:
0.416
PIE1-1

UniProt

c.100G>A p.Glu34Lys missense variant moderate contig1225 2277786

IGV: Start, Jump

G/A
NGS:
0.251
C90:
0.478
PIE1-1

UniProt

c.742T>A p.Ser248Thr missense variant moderate contig1225 2279320

IGV: Start, Jump

T/A
NGS:
0.265
C90:
0.890
PIE1-1

UniProt

c.773A>G p.Asn258Ser missense variant & splice region variant moderate contig1225 2279897

IGV: Start, Jump

A/G
NGS:
0.308
C90:
0.895
PIE1-1

UniProt

c.811T>C p.Tyr271His missense variant moderate contig1225 2279935

IGV: Start, Jump

T/C
NGS:
0.242
C90:
0.742
PIE1-1

UniProt

c.815C>T p.Pro272Leu missense variant moderate contig1225 2279939

IGV: Start, Jump

C/T
NGS:
0.301
C90:
0.885
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.542
C90:
0.852
PIE1-1

UniProt

c.1394A>G p.Asp465Gly missense variant moderate contig1225 2281654

IGV: Start, Jump

A/G
NGS:
0.274
C90:
0.818
PIE1-1

UniProt

c.1454T>C p.Val485Ala missense variant moderate contig1225 2281714

IGV: Start, Jump

T/C
NGS:
0.257
C90:
0.900
PIE1-1

UniProt

c.1548_1549insATG p.Gln516_Glu517insMet conservative inframe insertion moderate contig1225 2281807

IGV: Start, Jump

A/AGAT
NGS:
0.287
C90:
0.904
PIE1-1

UniProt

c.2174A>G p.His725Arg missense variant moderate contig1225 2283789

IGV: Start, Jump

A/G
NGS:
0.226
C90:
0.770
PIE1-1

UniProt

c.2185_2187delGTC p.Val729del conservative inframe deletion moderate contig1225 2283796

IGV: Start, Jump

AGTC/A
NGS:
0.255
C90:
0.876
PIE1-1

UniProt

c.3614A>G p.Lys1205Arg missense variant moderate contig1225 2285229

IGV: Start, Jump

A/G
NGS:
0.220
C90:
0.660
PIE1-1

UniProt

c.3869A>C p.Asn1290Thr missense variant moderate contig1225 2285484

IGV: Start, Jump

A/C
NGS:
0.259
C90:
0.909
PIE1-1

UniProt

c.5234T>C p.Ile1745Thr missense variant moderate contig1225 2287152

IGV: Start, Jump

T/C
NGS:
0.256
C90:
0.842
PIE1-1

UniProt

c.6041T>C p.Met2014Thr missense variant moderate contig1225 2288214

IGV: Start, Jump

T/C
NGS:
0.254
C90:
0.876
PIE1-1

UniProt

c.6409A>C p.Lys2137Gln missense variant moderate contig1225 2288582

IGV: Start, Jump

A/C
NGS:
0.167
C90:
0.660
PIE1-1

UniProt

c.6725C>T p.Ala2242Val missense variant moderate contig1225 2289290

IGV: Start, Jump

C/T
NGS:
0.359
C90:
0.737
PIE1-1

UniProt

c.6738G>T p.Glu2246Asp missense variant moderate contig1225 2289303

IGV: Start, Jump

G/T
NGS:
0.113
C90:
0.397
PIE1-1

UniProt

c.6875T>C p.Leu2292Ser missense variant moderate contig1225 2289440

IGV: Start, Jump

T/C
NGS:
0.199
C90:
0.679

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
closely related moderately related distantly related
  1. 0.020 TI-1 (RSP11597)
  2. 0.021 TI-1 (RSP11605)
  3. 0.039 JL Cross 82 (RSP11583)
  4. 0.041 TI-14 (RSP11590)
  5. 0.043 JL Cross 23 (RSP11524)
  6. 0.043 JL Cross 60 (RSP11561)
  7. 0.043 JL X NSPM1 11 (RSP11471)
  8. 0.045 Black (RSP11608)
  9. 0.049 JL Cross 75 (RSP11576)
  10. 0.051 JL Cross 71 (RSP11572)
  11. 0.051 TI-14 (RSP11599)
  12. 0.052 JL Cross 19 (RSP11520)
  13. 0.052 TI-3 (RSP11587)
  14. 0.052 TI-13 (RSP11593)
  15. 0.053 TI-18 (RSP11595)
  16. 0.054 TI-19 (RSP11592)
  17. 0.054 JL Cross 69 (RSP11570)
  18. 0.055 JL Cross 58 (RSP11559)
  19. 0.056 JL x NSPM1 1 5 (RSP11479)
  20. 0.057 TI-2 (RSP11596)

Most genetically distant strains (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.242 Carmaleonte (RSP11207)
  2. 0.241 Fedora 17 (RSP11203)
  3. 0.236 Carmagnola USO 31 (RSP11204)
  4. 0.235 Feral (RSP11205)
  5. 0.235 CS (RSP11208)
  6. 0.235 Feral (RSP11206)
  7. 0.232 80E (RSP11213)
  8. 0.232 Tiborszallasie (RSP11210)
  9. 0.227 80E (RSP11212)
  10. 0.227 Eletta Campana (RSP11209)
  11. 0.219 Arcata Trainwreck (RSP11176)
  12. 0.218 80E (RSP11211)
  13. 0.208 Unknown- Cherry Wine - 001 (RSP11268)
  14. 0.204 Unknown- Cherry Wine - 004 (RSP11271)
  15. 0.203 Unknown- Cherry Wine - 002 (RSP11269)
  16. 0.203 Cbot-2019-005 (RSP11133)
  17. 0.202 Swiss Dream (RSP11408)
  18. 0.197 Unknown- Cherry Wine - 003 (RSP11270)
  19. 0.195 Carmagnola garden (RSP11603)
  20. 0.195 AVIDEKEL 2 0 (RSP11174)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448495
Overlapping SNPs:
86
Concordance:
52

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

SHASUM Hash
b6ccf4b2d32844a0e1735640029339981ba2ebebf45a24cb23ab1637862ccc2e
QR code for RSP11551

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