JL Cross 50
RSP 11551
Grower: Kevin McKernan
General Information
- Accession Date
- June 21, 2020
- Reported Plant Sex
- not reported
- Report Type
- CannSNP90
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
Summary of Deletions
THCAS
- Correlation:
- 0.43
- Call:
- intact
CBDAS
- Correlation:
- 0.2
- Call:
- intact
CBCAS
- Correlation:
- -0.14
- Call:
- intact
Plant Sex
- Correlation:
- 0.06
- Call:
- male
Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.242C>A | p.Pro81Gln | missense variant | moderate | contig1772 | 2082468 | C/A |
|
CBDAS | c.407G>A | p.Arg136His | missense variant | moderate | contig1772 | 2082633 | G/A | |
CBDAS | c.538T>A | p.Cys180Ser | missense variant | moderate | contig1772 | 2082764 | T/A |
|
CBDAS | c.545G>C | p.Gly182Ala | missense variant | moderate | contig1772 | 2082771 | G/C |
|
CBDAS | c.637C>G | p.His213Asp | missense variant | moderate | contig1772 | 2082863 | C/G |
|
CBDAS | c.688T>A | p.Leu230Ile | missense variant | moderate | contig1772 | 2082914 | T/A |
|
CBDAS | c.704C>G | p.Ala235Gly | missense variant | moderate | contig1772 | 2082930 | C/G |
|
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
THCAS | c.749C>A | p.Ala250Asp | missense variant | moderate | contig741 | 4417079 | G/T | |
THCAS | c.424G>A | p.Val142Ile | missense variant | moderate | contig741 | 4417404 | C/T |
|
THCAS | c.385G>A | p.Val129Ile | missense variant | moderate | contig741 | 4417443 | C/T |
|
THCAS | c.355A>T | p.Met119Leu | missense variant | moderate | contig741 | 4417473 | T/A |
|
THCAS | c.187A>C | p.Ile63Leu | missense variant | moderate | contig741 | 4417641 | T/G |
Variants (Select Genes of Interest)
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4a | c.1000T>C | p.Tyr334His | missense variant | moderate | contig700 | 1938411 | T/C | |
PKSG-2a | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1944238 | A/T | |
PKSG-2a | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1944273 | T/C | |
PKSG-2a | c.995C>T | p.Ser332Phe | missense variant | moderate | contig700 | 1944395 | G/A | |
PKSG-2a | c.781T>A | p.Leu261Ile | missense variant | moderate | contig700 | 1944609 | A/T | |
PKSG-2a | c.623T>C | p.Phe208Ser | missense variant | moderate | contig700 | 1944767 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1951471 | G/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
OAC-2 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 110019 | T/C | |
OAC-1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 118144 | T/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.6307A>C | p.Lys2103Gln | missense variant | moderate | contig1460 | 1185177 | T/G | |
PIE1-2 | c.6055C>T | p.Leu2019Phe | missense variant | moderate | contig1460 | 1185429 | G/A | |
PIE1-2 | c.5132T>C | p.Ile1711Thr | missense variant | moderate | contig1460 | 1186607 | A/G |
|
PIE1-2 | c.3512A>G | p.Lys1171Arg | missense variant | moderate | contig1460 | 1188528 | T/C | |
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
PIE1-2 | c.1117C>G | p.Gln373Glu | missense variant | moderate | contig1460 | 1192281 | G/C | |
PIE1-2 | c.1093G>A | p.Gly365Ser | missense variant | moderate | contig1460 | 1192305 | C/T | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
PIE1-2 | c.349C>T | p.Pro117Ser | missense variant & splice region variant | moderate | contig1460 | 1195017 | G/A |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
PIE1-1 | c.100G>A | p.Glu34Lys | missense variant | moderate | contig1225 | 2277786 | G/A | |
PIE1-1 | c.742T>A | p.Ser248Thr | missense variant | moderate | contig1225 | 2279320 | T/A | |
PIE1-1 | c.773A>G | p.Asn258Ser | missense variant & splice region variant | moderate | contig1225 | 2279897 | A/G | |
PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
PIE1-1 | c.1454T>C | p.Val485Ala | missense variant | moderate | contig1225 | 2281714 | T/C |
|
PIE1-1 |
c.1548_1549i |
p.Gln516_Glu |
conservative inframe insertion | moderate | contig1225 | 2281807 | A/AGAT | |
PIE1-1 | c.2174A>G | p.His725Arg | missense variant | moderate | contig1225 | 2283789 | A/G |
|
PIE1-1 |
c.2185_2187d |
p.Val729del | conservative inframe deletion | moderate | contig1225 | 2283796 | AGTC/A |
|
PIE1-1 | c.3614A>G | p.Lys1205Arg | missense variant | moderate | contig1225 | 2285229 | A/G | |
PIE1-1 | c.3869A>C | p.Asn1290Thr | missense variant | moderate | contig1225 | 2285484 | A/C | |
PIE1-1 | c.5234T>C | p.Ile1745Thr | missense variant | moderate | contig1225 | 2287152 | T/C |
|
PIE1-1 | c.6041T>C | p.Met2014Thr | missense variant | moderate | contig1225 | 2288214 | T/C |
|
PIE1-1 | c.6409A>C | p.Lys2137Gln | missense variant | moderate | contig1225 | 2288582 | A/C | |
PIE1-1 | c.6725C>T | p.Ala2242Val | missense variant | moderate | contig1225 | 2289290 | C/T | |
PIE1-1 | c.6738G>T | p.Glu2246Asp | missense variant | moderate | contig1225 | 2289303 | G/T |
|
PIE1-1 | c.6875T>C | p.Leu2292Ser | missense variant | moderate | contig1225 | 2289440 | T/C |
Nearest genetic relatives (All Samples)
- 0.020 TI-1 (RSP11597)
- 0.021 TI-1 (RSP11605)
- 0.039 JL Cross 82 (RSP11583)
- 0.041 TI-14 (RSP11590)
- 0.043 JL Cross 23 (RSP11524)
- 0.043 JL Cross 60 (RSP11561)
- 0.043 JL X NSPM1 11 (RSP11471)
- 0.045 Black (RSP11608)
- 0.049 JL Cross 75 (RSP11576)
- 0.051 JL Cross 71 (RSP11572)
- 0.051 TI-14 (RSP11599)
- 0.052 JL Cross 19 (RSP11520)
- 0.052 TI-3 (RSP11587)
- 0.052 TI-13 (RSP11593)
- 0.053 TI-18 (RSP11595)
- 0.054 TI-19 (RSP11592)
- 0.054 JL Cross 69 (RSP11570)
- 0.055 JL Cross 58 (RSP11559)
- 0.056 JL x NSPM1 1 5 (RSP11479)
- 0.057 TI-2 (RSP11596)
Most genetically distant strains (All Samples)
- 0.242 Carmaleonte (RSP11207)
- 0.241 Fedora 17 (RSP11203)
- 0.236 Carmagnola USO 31 (RSP11204)
- 0.235 Feral (RSP11205)
- 0.235 CS (RSP11208)
- 0.235 Feral (RSP11206)
- 0.232 80E (RSP11213)
- 0.232 Tiborszallasie (RSP11210)
- 0.227 80E (RSP11212)
- 0.227 Eletta Campana (RSP11209)
- 0.219 Arcata Trainwreck (RSP11176)
- 0.218 80E (RSP11211)
- 0.208 Unknown- Cherry Wine - 001 (RSP11268)
- 0.204 Unknown- Cherry Wine - 004 (RSP11271)
- 0.203 Unknown- Cherry Wine - 002 (RSP11269)
- 0.203 Cbot-2019-005 (RSP11133)
- 0.202 Swiss Dream (RSP11408)
- 0.197 Unknown- Cherry Wine - 003 (RSP11270)
- 0.195 Carmagnola garden (RSP11603)
- 0.195 AVIDEKEL 2 0 (RSP11174)
Nearest genetic relative in Phylos dataset
Phylos Strain SRR4448495
- Overlapping SNPs:
- 86
- Concordance:
- 52
Nearest genetic relative in Lynch dataset
Lynch Strain SRR3495248
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- SHASUM Hash
-
b6ccf4b2d32844a0
e173564002933998 1ba2ebebf45a24cb 23ab1637862ccc2e