Advanced Strain Search

Blueberry Cheesecake

RSP 10670

Grower: NA

General Information

Sample Name
Blueberry Cheesecake Yellow Clone Gen1_23JAN2017
Accession Date
February 14, 2017
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.94%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0390
male female RSP10670

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
DXR-1

UniProt

c.139A>G p.Arg47Gly missense variant moderate contig380 235296

IGV: Start, Jump

T/C
NGS:
0.020
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.002 Blueberry Cheesecake (RSP10672)
  2. 0.005 Blueberry Cheesecake (RSP10671)
  3. 0.039 JL#2 (RSP11076)
  4. 0.176 BlueBerry Cheesecake x JL Male (RSP11201)
  5. 0.196 Blueberry Cheesecake (RSP10646)
  6. 0.218 Blueberry Cheesecake (RSP10684)
  7. 0.235 RKM-2018-031 (RSP11123)
  8. 0.235 Suver Haze (RSP11364)
  9. 0.238 Joy (RSP11380)
  10. 0.241 Electra (RSP11366)
  11. 0.242 Harlox (RSP10641)
  12. 0.246 Durban Poison (RSP11014)
  13. 0.247 Lift (RSP11378)
  14. 0.249 Serious Happiness (RSP10763)
  15. 0.249 JL Compost (RSP11657)
  16. 0.252 Durban Poison #1 (RSP11013)
  17. 0.253 Queen Jesus (RSP10105)
  18. 0.253 Badger (RSP11614)
  19. 0.256 Liberty Haze (RSP11000)
  20. 0.256 101st AIRBORN CBD (RSP11350)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
closely related moderately related distantly related
  1. 0.412 Big Bud (SRR14708270)
  2. 0.406 80E (RSP11213)
  3. 0.403 Cherry Blossom (RSP11317)
  4. 0.402 Cherry Blossom CBG (RSP11303)
  5. 0.401 Feral (RSP11205)
  6. 0.399 Cherry Blossom (RSP11328)
  7. 0.398 Cherry Blossom (RSP11309)
  8. 0.396 80E (RSP11211)
  9. 0.395 Feral (RSP10890)
  10. 0.393 BagSeed (RSP12627)
  11. 0.393 Cherry Blossom (RSP11323)
  12. 0.392 80E (RSP11212)
  13. 0.390 Cherry Blossom (RSP11333)
  14. 0.389 Kush Hemp E1 (RSP11128)
  15. 0.387 Cherry Blossom (RSP11298)
  16. 0.387 R3in134 (SRR14708220)
  17. 0.387 R1in136 (SRR14708226)
  18. 0.386 RKM-2018-026 (RSP11118)
  19. 0.384 Cherry Blossom (RSP11314)
  20. 0.384 Cherry Blossom (RSP11324)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448459
Overlapping SNPs:
108
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
cbd2f023c298eb95f410bca9cf880f9c8370b9fcd178d4b74527491b9094c15e
Stamping Certificate
Download PDF (847.5 KB)
SHASUM Hash
5f7ef468e9fb730425b981b49af662e392440ef039b0e8e21108a6e9dc276603
QR code for RSP10670

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