Advanced Strain Search

Tenth Planet (Leaves)

RSP 13180

Grower: Kris James

General Information

Sample Name
Tenth_Planet_(Leaves)_20240722
Accession Date
July 28, 2024
Reported Plant Sex
Not Reported
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.41%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0147
male female RSP13180

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.096
C90:
0.555
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.090
C90:
0.531
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.3202A>C p.Thr1068Pro missense variant moderate contig2621 343245

IGV: Start, Jump

A/C
NGS:
0.053
C90:
0.000
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.134G>A p.Arg45Gln missense variant moderate contig700 2724301

IGV: Start, Jump

C/T
NGS:
0.018
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
ELF4

UniProt

c.144T>A p.Asp48Glu missense variant moderate contig869 622426

IGV: Start, Jump

A/T
NGS:
0.031
C90:
0.000
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.740A>G p.Glu247Gly missense variant moderate contig97 242446

IGV: Start, Jump

A/G
NGS:
0.002
C90:
0.000
ELF3

UniProt

c.752G>T p.Gly251Val missense variant moderate contig97 242458

IGV: Start, Jump

G/T
NGS:
0.022
C90:
0.139
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
FLD

UniProt

c.2929T>C p.Phe977Leu missense variant moderate contig1450 2044103

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.349
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.225
FLD

UniProt

c.2681T>C p.Ile894Thr missense variant moderate contig1450 2044853

IGV: Start, Jump

A/G
NGS:
0.020
C90:
0.144
PKSB-3

UniProt

c.1946C>T p.Pro649Leu missense variant moderate contig93 3340053

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.127 Tenth Planet Roots (RSP13179)
  2. 0.177 Blueberry Cheesecake (RSP10684)
  3. 0.178 Trump x Trump (RSP11466)
  4. 0.182 Electra (RSP11366)
  5. 0.183 Serious Happiness (RSP10763)
  6. 0.194 Doug s Varin (RSP11243)
  7. 0.195 Rest (RSP11377)
  8. 0.198 Thank You Jerry (RSP11459)
  9. 0.203 Suver Haze (RSP11364)
  10. 0.203 Banana Daddy 1 Big (RSP11496)
  11. 0.204 SPQ (RSP11370)
  12. 0.207 Domnesia (RSP11184)
  13. 0.211 JL Cross 10 (RSP11511)
  14. 0.212 Lift (RSP11378)
  15. 0.213 Tahoe OG (RSP11189)
  16. 0.219 Liberty Haze (RSP11000)
  17. 0.220 Badger (RSP11614)
  18. 0.223 GG 4 (RSP11461)
  19. 0.224 CPH (RSP11367)
  20. 0.227 JL Cross 11 (RSP11512)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
closely related moderately related distantly related
  1. 0.517 Jamaican Lion (RSP12916)
  2. 0.499 JL yellow (RSP11075)
  3. 0.487 Jamaican Lion (RSP12917)
  4. 0.476 Jamaican Lion (RSP12915)
  5. 0.469 Jamaican Lion (RSP12913)
  6. 0.462 JL 3rd Gen Mother (RSP11214)
  7. 0.440 JL 3rd Gen Father (RSP11196)
  8. 0.428 JL 4th Gen 5 (RSP11199)
  9. 0.425 Jamaican Lion (RSP12920)
  10. 0.424 JL 4th Gen 1 (RSP11193)
  11. 0.422 JL 4th Gen 2 (RSP11194)
  12. 0.417 Jamaican Lion (RSP12919)
  13. 0.415 JL 3rd Gen Mother (RSP11197)
  14. 0.414 Jamaican Lion (RSP12918)
  15. 0.413 Punta Roja (RSP12923)
  16. 0.408 Roze Zkittles x Unknown (RSP12925)
  17. 0.407 JL 4th Gen 4 (RSP11198)
  18. 0.405 JL 4th Gen 6 (RSP11200)
  19. 0.403 R1in136 (SRR14708226)
  20. 0.400 IUP3 (SRR14708256)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450115
Overlapping SNPs:
62
Concordance:
38

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495271
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

Transaction ID
18c17129f1e5ecfd45a76c5dd49a4a283783e67730c73a6f7ca8d53f0c4c2c7d
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
35ea4619b6dab623ca00c16c3d96ef7bbb72ee2263f9144fda2b31aa2635ca9a
QR code for RSP13180

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