Advanced Strain Search

Tenth Planet (Roots)

RSP 13179

Grower: Kris James

General Information

Sample Name
Tenth_Planet_(Roots)_20240722
Accession Date
July 28, 2024
Reported Plant Sex
Not Reported
Microbiome
Krona Plot
Fungal Microbiome
Krona Plot
Bacterial Microbiome
Krona Plot
Viral Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.38%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0217
male female RSP13179

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.3202A>C p.Thr1068Pro missense variant moderate contig2621 343245

IGV: Start, Jump

A/C
NGS:
0.053
C90:
0.000
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
GGR

UniProt

c.376G>C p.Glu126Gln missense variant moderate contig2282 549368

IGV: Start, Jump

G/C
NGS:
0.015
C90:
0.110
GGR

UniProt

c.382C>T p.Leu128Phe missense variant moderate contig2282 549374

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.000
PKSB-3

UniProt

c.1946C>T p.Pro649Leu missense variant moderate contig93 3340053

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.127 Tenth Planet Leaves (RSP13180)
  2. 0.197 Serious Happiness (RSP10763)
  3. 0.197 Blueberry Cheesecake (RSP10684)
  4. 0.198 Trump x Trump (RSP11466)
  5. 0.210 Electra (RSP11366)
  6. 0.214 Tahoe OG (RSP11189)
  7. 0.214 Domnesia (RSP11184)
  8. 0.220 Thank You Jerry (RSP11459)
  9. 0.221 Banana Daddy 1 Big (RSP11496)
  10. 0.221 Doug s Varin (RSP11243)
  11. 0.226 Rest (RSP11377)
  12. 0.227 SPQ (RSP11370)
  13. 0.233 Lift (RSP11378)
  14. 0.233 JL Cross 10 (RSP11511)
  15. 0.234 Liberty Haze (RSP11000)
  16. 0.236 GG 4 (RSP11461)
  17. 0.237 Joy (RSP11380)
  18. 0.242 CPH (RSP11367)
  19. 0.243 Suver Haze (RSP11364)
  20. 0.244 Badger (RSP11614)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
closely related moderately related distantly related
  1. 0.527 Jamaican Lion (RSP12916)
  2. 0.514 JL yellow (RSP11075)
  3. 0.501 Jamaican Lion (RSP12917)
  4. 0.486 JL 3rd Gen Mother (RSP11214)
  5. 0.485 Jamaican Lion (RSP12915)
  6. 0.460 Jamaican Lion (RSP12913)
  7. 0.441 JL 3rd Gen Father (RSP11196)
  8. 0.437 JL 4th Gen 1 (RSP11193)
  9. 0.434 JL 4th Gen 5 (RSP11199)
  10. 0.434 JL 3rd Gen Mother (RSP11197)
  11. 0.433 JL 4th Gen 2 (RSP11194)
  12. 0.426 JL 4th Gen 6 (RSP11200)
  13. 0.421 Jamaican Lion (RSP12920)
  14. 0.420 JL 4th Gen 4 (RSP11198)
  15. 0.419 Punta Roja (RSP12923)
  16. 0.419 Jamaican Lion (RSP12919)
  17. 0.414 Tanao Sri-white 80 (RSP11621)
  18. 0.412 Jamaican Lion (RSP12918)
  19. 0.411 R1in136 (SRR14708226)
  20. 0.408 R3in134 (SRR14708220)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448451
Overlapping SNPs:
57
Concordance:
33

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495227
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

Transaction ID
22938c84ae0b5b05136cb98a1ca48d780bc7781648387ee2d9e1a6f5387c799f
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
11272ed9931c62320058a8303b8f3e5af9ff4ad4161f81e7f2ede448f109b19e
QR code for RSP13179

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