JL Cross 45
RSP 11546
Grower: Kevin McKernan
General Information
- Accession Date
- June 21, 2020
- Reported Plant Sex
- not reported
- Report Type
- CannSNP90
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
Summary of Deletions
THCAS
- Correlation:
- -0.39
- Call:
- intact
CBDAS
- Correlation:
- 0.98
- Call:
- deleted
CBCAS
- Correlation:
- 0.97
- Call:
- deleted
Plant Sex
- Correlation:
- 0.93
- Call:
- female
Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.634G>C | p.Val212Leu | missense variant | moderate | contig885 | 734 | G/C | |
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1384A>C | p.Lys462Gln | missense variant | moderate | contig885 | 2270 | A/C | |
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4a | c.1000T>C | p.Tyr334His | missense variant | moderate | contig700 | 1938411 | T/C | |
PKSG-2a | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1944238 | A/T | |
PKSG-2a | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1944273 | T/C | |
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1951471 | G/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198delG | p.Arg733fs | frameshift variant | high | contig97 | 245028 | CG/C | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.6307A>C | p.Lys2103Gln | missense variant | moderate | contig1460 | 1185177 | T/G | |
PIE1-2 | c.6149G>A | p.Arg2050Lys | missense variant | moderate | contig1460 | 1185335 | C/T | |
PIE1-2 | c.5135C>T | p.Ala1712Val | missense variant | moderate | contig1460 | 1186604 | G/A |
|
PIE1-2 | c.5132T>C | p.Ile1711Thr | missense variant | moderate | contig1460 | 1186607 | A/G |
|
PIE1-2 | c.3512A>G | p.Lys1171Arg | missense variant | moderate | contig1460 | 1188528 | T/C | |
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
PIE1-2 | c.1117C>G | p.Gln373Glu | missense variant | moderate | contig1460 | 1192281 | G/C | |
PIE1-2 | c.1093G>A | p.Gly365Ser | missense variant | moderate | contig1460 | 1192305 | C/T | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
PIE1-2 | c.349C>T | p.Pro117Ser | missense variant & splice region variant | moderate | contig1460 | 1195017 | G/A |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.470C>A | p.Ser157Tyr | missense variant | moderate | contig883 | 269959 | C/A | |
EMF1-1 | c.605A>T | p.His202Leu | missense variant | moderate | contig883 | 270210 | A/T | |
FT |
c.334_339dup |
p.Cys112_Tyr |
conservative inframe insertion | moderate | contig1561 | 3126370 | G/GTGCTAT | |
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
PIE1-1 | c.742T>A | p.Ser248Thr | missense variant | moderate | contig1225 | 2279320 | T/A | |
PIE1-1 | c.773A>G | p.Asn258Ser | missense variant & splice region variant | moderate | contig1225 | 2279897 | A/G | |
PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
PIE1-1 | c.1454T>C | p.Val485Ala | missense variant | moderate | contig1225 | 2281714 | T/C |
|
PIE1-1 |
c.1548_1549i |
p.Gln516_Glu |
conservative inframe insertion | moderate | contig1225 | 2281807 | A/AGAT | |
PIE1-1 | c.2174A>G | p.His725Arg | missense variant | moderate | contig1225 | 2283789 | A/G |
|
PIE1-1 |
c.2185_2187d |
p.Val729del | conservative inframe deletion | moderate | contig1225 | 2283796 | AGTC/A |
|
PIE1-1 | c.3614A>G | p.Lys1205Arg | missense variant | moderate | contig1225 | 2285229 | A/G | |
PIE1-1 | c.3869A>C | p.Asn1290Thr | missense variant | moderate | contig1225 | 2285484 | A/C | |
PIE1-1 | c.5234T>C | p.Ile1745Thr | missense variant | moderate | contig1225 | 2287152 | T/C |
|
PIE1-1 | c.6041T>C | p.Met2014Thr | missense variant | moderate | contig1225 | 2288214 | T/C |
|
PIE1-1 | c.6251G>A | p.Arg2084Lys | missense variant | moderate | contig1225 | 2288424 | G/A | |
PIE1-1 | c.6409A>C | p.Lys2137Gln | missense variant | moderate | contig1225 | 2288582 | A/C | |
PIE1-1 | c.6725C>T | p.Ala2242Val | missense variant | moderate | contig1225 | 2289290 | C/T | |
PIE1-1 | c.6875T>C | p.Leu2292Ser | missense variant | moderate | contig1225 | 2289440 | T/C | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T |
Nearest genetic relatives (All Samples)
- 0.049 JL Cross 41 (RSP11542)
- 0.073 JL Cross 56 (RSP11557)
- 0.082 JL Cross 62 (RSP11563)
- 0.088 JL Cross 78 (RSP11579)
- 0.088 JL Cross 30 (RSP11531)
- 0.091 TI-4 (RSP11598)
- 0.093 JL Cross 85 (RSP11586)
- 0.094 JL Cross 84 (RSP11585)
- 0.102 JL Cross 59 (RSP11560)
- 0.104 JL Cross 1 (RSP11502)
- 0.109 JL Cross 25 (RSP11526)
- 0.113 JL Cross 61 (RSP11562)
- 0.113 JL Cross 36 (RSP11537)
- 0.113 JL Cross 80 (RSP11581)
- 0.113 JL Cross 6 (RSP11507)
- 0.117 JL Cross 37 (RSP11538)
- 0.120 JL Cross 77 (RSP11578)
- 0.121 JL Cross 72 (RSP11573)
- 0.121 JL Cross 51 (RSP11552)
- 0.126 Herijuana (RSP11181)
Most genetically distant strains (All Samples)
- 0.249 Feral (RSP11205)
- 0.246 CS (RSP11208)
- 0.241 Tiborszallasie (RSP11210)
- 0.239 Fedora 17 (RSP11203)
- 0.239 Carmaleonte (RSP11207)
- 0.235 Feral (RSP11206)
- 0.232 Carmagnola USO 31 (RSP11204)
- 0.229 80E (RSP11212)
- 0.224 80E (RSP11213)
- 0.222 Eletta Campana (RSP11209)
- 0.222 80E (RSP11211)
- 0.205 JL Cross 33 (RSP11534)
- 0.202 JL 4th Gen 6 (RSP11200)
- 0.201 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.198 Arcata Trainwreck (RSP11176)
- 0.189 Red Eye OG (RSP11190)
- 0.188 JL 3rd Gen Father (RSP11196)
- 0.187 TI-7 (RSP11601)
- 0.187 Tahoe OG (RSP11189)
- 0.187 Chem 91 (RSP11185)
Nearest genetic relative in Phylos dataset
Phylos Strain SRR8346496
- Overlapping SNPs:
- 86
- Concordance:
- 58
Nearest genetic relative in Lynch dataset
Lynch Strain SRR3495218
- Overlapping SNPs:
- 4
- Concordance:
- 3
Blockchain Registration Information
- SHASUM Hash
-
36218b62a88359c8
48426fbcd5d4f96e ea4ba47b6f690b71 49be034ded64c486