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Old Town

RSP 13257

Grower: The medicinal plant research institute/Lampang Thailand

General Information

Sample Name
CS195-20241021
Accession Date
October 20, 2024
Reported Plant Sex
Not Reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.8%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0342
male female RSP13257

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.090
C90:
0.531
PHL-2 c.3556_3557delAA p.Lys1186fs frameshift variant high contig2621 343598

IGV: Start, Jump

GAA/G
NGS:
0.013
C90:
0.096
ELF3

UniProt

c.740A>G p.Glu247Gly missense variant moderate contig97 242446

IGV: Start, Jump

A/G
NGS:
0.002
C90:
0.000
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
AAE1-3

UniProt

c.181G>A p.Val61Ile missense variant moderate contig976 1083894

IGV: Start, Jump

C/T
NGS:
0.055
C90:
0.000
AAE1-3

UniProt

c.179C>T p.Thr60Ile missense variant moderate contig976 1083896

IGV: Start, Jump

G/A
NGS:
0.009
C90:
0.000
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000
PKSB-3

UniProt

c.1978A>G p.Asn660Asp missense variant moderate contig93 3340085

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.250 RKM-2018-027 (RSP11119)
  2. 0.257 Blue Dream (RSP11006)
  3. 0.260 BLACK JACK (RSP11346)
  4. 0.264 RKM-2018-025 (RSP11117)
  5. 0.265 RKM-2018-016 (RSP11108)
  6. 0.267 Black Jack (RSP10603)
  7. 0.269 Blue Dream (RSP11017)
  8. 0.272 Blue Dream (RSP11010)
  9. 0.275 Blueberry Cheesecake (RSP10684)
  10. 0.276 Durban Poison (RSP11014)
  11. 0.288 Blue Dream (RSP11012)
  12. 0.290 Blue Dream (RSP11008)
  13. 0.292 Electra (RSP11366)
  14. 0.295 Snoops Dream (RSP11003)
  15. 0.295 Super Blue Dream (RSP11011)
  16. 0.296 UP Sunrise (RSP10989)
  17. 0.297 Durban Poison (RSP10998)
  18. 0.298 Blue Dream (RSP11004)
  19. 0.299 Doug s Varin (RSP11243)
  20. 0.300 Durban Poison 1 (RSP10996)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.466 Carmaleonte (RSP11207)
  2. 0.466 CS (RSP11208)
  3. 0.459 Cherry Blossom (RSP11314)
  4. 0.456 Arcata Trainwreck (RSP11176)
  5. 0.456 Rainbow Belts 1 0 (RSP12911)
  6. 0.451 JL 3rd Gen Father (RSP11196)
  7. 0.451 Feral (RSP11205)
  8. 0.449 Feral (RSP11206)
  9. 0.447 Feral (RSP10890)
  10. 0.447 Feral (RSP10891)
  11. 0.445 Rainbow Belts 3 0 11 (RSP12801)
  12. 0.444 Monoica (RSP10241)
  13. 0.443 R1in136 (SRR14708226)
  14. 0.442 AST 530 (RSP13256)
  15. 0.442 Carmagnola (RSP11202)
  16. 0.442 Right Mark (RSP11628)
  17. 0.441 Santhica27 (RSP10056)
  18. 0.441 Guru G 6 (RSP12864)
  19. 0.441 Tiborszallasie (RSP11210)
  20. 0.440 80E (RSP11213)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
5
Concordance:
4

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495192
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

SHASUM Hash
f6780211e2e4c9360c4738dfd1138c7262f8fe91c485475e257e29700fe23670
QR code for RSP13257

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