CBG Berry
RSP 11445
Grower: Blue Forest Farms
General Information
- Sample Name
- CBG-#48
- Accession Date
- March 31, 2020
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.99T>A | p.Tyr33* | stop gained | high | contig700 | 1951783 | A/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.079 CBG Fiber (RSP11440)
- 0.102 CBG #30 (RSP11447)
- 0.139 CBG-#40 (RSP11444)
- 0.162 Electra (RSP11366)
- 0.165 CBG Berry (RSP11446)
- 0.166 Lift (RSP11378)
- 0.180 Domnesia (RSP11184)
- 0.182 Doug s Varin (RSP11243)
- 0.203 Lifter (RSP11365)
- 0.204 Joy (RSP11380)
- 0.204 Serious Happiness (RSP10763)
- 0.205 Suver Haze (RSP11364)
- 0.210 UnObtanium (RSP11611)
- 0.211 Whitey (RSP11363)
- 0.211 Rest (RSP11377)
- 0.213 Double Black Label (RSP12499)
- 0.215 Trump x Trump (RSP11466)
- 0.218 Blueberry Cheesecake (RSP10684)
- 0.220 JL X NSPM1 14 (RSP11473)
- 0.222 Badger (RSP11614)
Most genetically distant strains (All Samples)
- 0.448 80E (RSP11213)
- 0.440 Cherry Blossom (RSP11323)
- 0.430 JL yellow (RSP11075)
- 0.423 80E (RSP11211)
- 0.420 80E (RSP11212)
- 0.410 Northern Skunk (RSP11456)
- 0.410 Tanao Sri -46- (RSP11486)
- 0.409 R1in136 (SRR14708226)
- 0.407 JL 3rd Gen Mother (RSP11214)
- 0.407 Squirrel Tail -81- (RSP11622)
- 0.405 JL 3rd Gen Father (RSP11196)
- 0.405 CS Indica (RSP11658)
- 0.404 CS (RSP11208)
- 0.403 Ruderalis Indica (SRR14708267)
- 0.402 IUP3 (SRR14708256)
- 0.400 Tanao Sri-white -80- (RSP11621)
- 0.400 Monoica (RSP10241)
- 0.399 JL 4th Gen 5 (RSP11199)
- 0.399 PCL2 (SRR14708245)
- 0.398 Carmagnola (RSP11037)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 78
- Concordance:
- 53
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
90e6613d2d6b502c
00c9b2b9364fba8f 740a31c7bfaa1c2e b88832720d50414f - Stamping Certificate
- Download PDF (39.9 KB)
- SHASUM Hash
-
aed9af45a5ba8679
7bb79d31ccd9bdc0 a5ed0372b1f36228 51fa24cea0a85e74