Advanced Strain Search

#5 Football

RSP 11648

Grower: Kevin McKernan

General Information

Accession Date
September 23, 2020
Reported Plant Sex
not reported
Report Type
CannSNP90

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

This chart represents the Log-R Ratio (LRR) over variants in the region of the THCA synthase gene. A high correlation between the LRR and samples with a known deletion in THCA synthase indicates the THCA region is deleted and a low correlation indicates it is intact.

THCAS Log-R Ratio
intact deleted RSP11648

This chart represents the Log-R Ratio (LRR) over variants in the region of the CBDA synthase gene. A high correlation between the LRR and samples with a known deletion in CBDA synthase indicates the CBDA region is deleted and a low correlation indicates it is intact.

CBDAS Log-R Ratio
intact deleted RSP11648

This chart represents the Log-R Ratio (LRR) over variants in the region of the CBCA synthase gene. A high correlation between the LRR and samples with a known deletion in CBCA synthase indicates the CBCA region is deleted and a low correlation indicates it is intact.

CBCAS Log-R Ratio
intact deleted RSP11648

This chart represents the Log-R Ratio (LRR) over variants in the Y-contigs. A high correlation between the LRR and samples which are known Females indicates these Y-contigs are deleted in this sample and a low correlation indicates that the Y-contigs are not deleted and is likely Male.

Plant Sex Log-R Ratio
male female RSP11648

Summary of Deletions

THCAS

Correlation:
0.39
Call:
intact

CBDAS

Correlation:
0.99
Call:
deleted

CBCAS

Correlation:
0.39
Call:
intact

Plant Sex

Correlation:
0.93
Call:
female

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.424G>A p.Val142Ile missense variant moderate contig741 4417404

IGV: Start, Jump

C/T
NGS:
0.000
C90:
0.761
THCAS c.385G>A p.Val129Ile missense variant moderate contig741 4417443

IGV: Start, Jump

C/T
NGS:
0.000
C90:
0.947
THCAS c.355A>T p.Met119Leu missense variant moderate contig741 4417473

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.962
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)
PKSA-3b

UniProt

c.298G>A p.Ala100Thr missense variant moderate contig705 2271640

IGV: Start, Jump

C/T
NGS:
0.044
C90:
0.177
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.096
C90:
0.555
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.090
C90:
0.531
PHL-2 c.1540A>G p.Thr514Ala missense variant moderate contig2621 340818

IGV: Start, Jump

A/G
NGS:
0.042
C90:
0.282
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.3002A>G p.Tyr1001Cys missense variant moderate contig2621 343045

IGV: Start, Jump

A/G
NGS:
0.055
C90:
0.316
PHL-2 c.3027G>T p.Lys1009Asn missense variant moderate contig2621 343070

IGV: Start, Jump

G/T
NGS:
0.055
C90:
0.311
PHL-2 c.3033T>G p.Cys1011Trp missense variant moderate contig2621 343076

IGV: Start, Jump

T/G
NGS:
0.055
C90:
0.292
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-4a

UniProt

c.1000T>C p.Tyr334His missense variant moderate contig700 1938411

IGV: Start, Jump

T/C
NGS:
0.002
C90:
0.804
PKSG-2a

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1944238

IGV: Start, Jump

A/T
NGS:
0.009
C90:
0.880
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1944395

IGV: Start, Jump

G/A
NGS:
0.015
C90:
0.598
PKSG-2a

UniProt

c.781T>A p.Leu261Ile missense variant moderate contig700 1944609

IGV: Start, Jump

A/T
NGS:
0.026
C90:
0.574
PKSG-2a

UniProt

c.623T>C p.Phe208Ser missense variant moderate contig700 1944767

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.598
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.67A>T p.Ile23Phe missense variant moderate contig700 1951815

IGV: Start, Jump

T/A
NGS:
0.033
C90:
0.325
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
OAC-2

UniProt

c.220A>G p.Ile74Val missense variant moderate contig931 110019

IGV: Start, Jump

T/C
NGS:
0.011
C90:
0.670
OAC-1

UniProt

c.220A>G p.Ile74Val missense variant moderate contig931 118144

IGV: Start, Jump

T/C
NGS:
0.033
C90:
0.670
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
ELF3

UniProt

c.2198delG p.Arg733fs frameshift variant high contig97 245028

IGV: Start, Jump

CG/C
NGS:
0.002
C90:
0.612
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.044
C90:
0.622
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.6773T>C p.Leu2258Ser missense variant moderate contig1460 1184314

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.675
PIE1-2

UniProt

c.6653A>G p.Asn2218Ser missense variant moderate contig1460 1184434

IGV: Start, Jump

T/C
NGS:
0.059
C90:
0.928
PIE1-2

UniProt

c.6636T>G p.Asp2212Glu missense variant moderate contig1460 1184451

IGV: Start, Jump

A/C
NGS:
0.035
C90:
0.885
PIE1-2

UniProt

c.6307A>C p.Lys2103Gln missense variant moderate contig1460 1185177

IGV: Start, Jump

T/G
NGS:
0.004
C90:
0.679
PIE1-2

UniProt

c.6149G>A p.Arg2050Lys missense variant moderate contig1460 1185335

IGV: Start, Jump

C/T
NGS:
0.011
C90:
0.234
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
PIE1-2

UniProt

c.5135C>T p.Ala1712Val missense variant moderate contig1460 1186604

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.234
PIE1-2

UniProt

c.5132T>C p.Ile1711Thr missense variant moderate contig1460 1186607

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.852
PIE1-2

UniProt

c.3512A>G p.Lys1171Arg missense variant moderate contig1460 1188528

IGV: Start, Jump

T/C
NGS:
0.018
C90:
0.670
PIE1-2

UniProt

c.2083_2085delGTC p.Val695del conservative inframe deletion moderate contig1460 1189954

IGV: Start, Jump

GGAC/G
NGS:
0.046
C90:
0.880
PIE1-2

UniProt

c.2072A>G p.His691Arg missense variant moderate contig1460 1189968

IGV: Start, Jump

T/C
NGS:
0.046
C90:
0.789
PIE1-2

UniProt

c.1872T>A p.Asp624Glu missense variant moderate contig1460 1190252

IGV: Start, Jump

A/T
NGS:
0.086
C90:
0.990
PIE1-2

UniProt

c.1630G>C p.Ala544Pro missense variant moderate contig1460 1191600

IGV: Start, Jump

C/G
NGS:
0.070
C90:
0.933
PIE1-2

UniProt

c.1318A>G p.Asn440Asp missense variant moderate contig1460 1192080

IGV: Start, Jump

T/C
NGS:
0.018
C90:
0.100
PIE1-2

UniProt

c.1294G>A p.Asp432Asn missense variant moderate contig1460 1192104

IGV: Start, Jump

C/T
NGS:
0.018
C90:
0.100
PIE1-2

UniProt

c.1279G>A p.Val427Ile missense variant moderate contig1460 1192119

IGV: Start, Jump

C/T
NGS:
0.018
C90:
0.105
PIE1-2

UniProt

c.1156T>G p.Trp386Gly missense variant moderate contig1460 1192242

IGV: Start, Jump

A/C
NGS:
0.009
C90:
0.976
PIE1-2

UniProt

c.1144G>T p.Val382Leu missense variant moderate contig1460 1192254

IGV: Start, Jump

C/A
NGS:
0.000
C90:
0.105
PIE1-2

UniProt

c.1117C>G p.Gln373Glu missense variant moderate contig1460 1192281

IGV: Start, Jump

G/C
NGS:
0.002
C90:
0.818
PIE1-2

UniProt

c.1093G>A p.Gly365Ser missense variant moderate contig1460 1192305

IGV: Start, Jump

C/T
NGS:
0.002
C90:
0.986
PIE1-2

UniProt

c.1015G>A p.Asp339Asn missense variant moderate contig1460 1192383

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.100
PIE1-2

UniProt

c.982G>A p.Glu328Lys missense variant moderate contig1460 1192416

IGV: Start, Jump

C/T
NGS:
0.050
C90:
0.976
PIE1-2

UniProt

c.961C>T p.Arg321Trp missense variant moderate contig1460 1192437

IGV: Start, Jump

G/A
NGS:
0.013
C90:
0.100
PIE1-2

UniProt

c.710C>T p.Pro237Leu missense variant moderate contig1460 1193804

IGV: Start, Jump

G/A
NGS:
0.072
C90:
0.866
PIE1-2

UniProt

c.637T>A p.Ser213Thr missense variant moderate contig1460 1194421

IGV: Start, Jump

A/T
NGS:
0.079
C90:
0.885
PIE1-2

UniProt

c.349C>T p.Pro117Ser missense variant & splice region variant moderate contig1460 1195017

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.962
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
FLD

UniProt

c.2929T>C p.Phe977Leu missense variant moderate contig1450 2044103

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.349
FLD

UniProt

c.125G>A p.Ser42Asn missense variant moderate contig1450 2047909

IGV: Start, Jump

C/T
NGS:
0.037
C90:
0.388
PKSA-3a

UniProt

c.298G>A p.Ala100Thr missense variant moderate contig1357 1144811

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.177
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.416
PIE1-1

UniProt

c.742T>A p.Ser248Thr missense variant moderate contig1225 2279320

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.890
PIE1-1

UniProt

c.773A>G p.Asn258Ser missense variant & splice region variant moderate contig1225 2279897

IGV: Start, Jump

A/G
NGS:
0.033
C90:
0.895
PIE1-1

UniProt

c.815C>T p.Pro272Leu missense variant moderate contig1225 2279939

IGV: Start, Jump

C/T
NGS:
0.029
C90:
0.885
PIE1-1

UniProt

c.1066C>T p.Arg356Trp missense variant moderate contig1225 2281326

IGV: Start, Jump

C/T
NGS:
0.015
C90:
0.105
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
PIE1-1

UniProt

c.1249G>T p.Val417Leu missense variant moderate contig1225 2281509

IGV: Start, Jump

G/T
NGS:
0.020
C90:
0.096
PIE1-1

UniProt

c.1384G>A p.Val462Ile missense variant moderate contig1225 2281644

IGV: Start, Jump

G/A
NGS:
0.002
C90:
0.105
PIE1-1

UniProt

c.1394A>G p.Asp465Gly missense variant moderate contig1225 2281654

IGV: Start, Jump

A/G
NGS:
0.007
C90:
0.818
PIE1-1

UniProt

c.1399G>A p.Asp467Asn missense variant moderate contig1225 2281659

IGV: Start, Jump

G/A
NGS:
0.002
C90:
0.100
PIE1-1

UniProt

c.1454T>C p.Val485Ala missense variant moderate contig1225 2281714

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.900
PIE1-1

UniProt

c.1548_1549insATG p.Gln516_Glu517insMet conservative inframe insertion moderate contig1225 2281807

IGV: Start, Jump

A/AGAT
NGS:
0.002
C90:
0.904
PIE1-1

UniProt

c.1785A>T p.Leu595Phe missense variant moderate contig1225 2282213

IGV: Start, Jump

A/T
NGS:
0.011
C90:
0.100
PIE1-1

UniProt

c.2174A>G p.His725Arg missense variant moderate contig1225 2283789

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.770
PIE1-1

UniProt

c.2185_2187delGTC p.Val729del conservative inframe deletion moderate contig1225 2283796

IGV: Start, Jump

AGTC/A
NGS:
0.000
C90:
0.876
PIE1-1

UniProt

c.3614A>G p.Lys1205Arg missense variant moderate contig1225 2285229

IGV: Start, Jump

A/G
NGS:
0.029
C90:
0.660
PIE1-1

UniProt

c.3869A>C p.Asn1290Thr missense variant moderate contig1225 2285484

IGV: Start, Jump

A/C
NGS:
0.002
C90:
0.909
PIE1-1

UniProt

c.5234T>C p.Ile1745Thr missense variant moderate contig1225 2287152

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.842
PIE1-1

UniProt

c.6041T>C p.Met2014Thr missense variant moderate contig1225 2288214

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.876
PIE1-1

UniProt

c.6251G>A p.Arg2084Lys missense variant moderate contig1225 2288424

IGV: Start, Jump

G/A
NGS:
0.002
C90:
0.230
PIE1-1

UniProt

c.6409A>C p.Lys2137Gln missense variant moderate contig1225 2288582

IGV: Start, Jump

A/C
NGS:
0.002
C90:
0.660
PIE1-1

UniProt

c.6725C>T p.Ala2242Val missense variant moderate contig1225 2289290

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.737
PIE1-1

UniProt

c.6875T>C p.Leu2292Ser missense variant moderate contig1225 2289440

IGV: Start, Jump

T/C
NGS:
0.011
C90:
0.679

Nearest genetic relatives (All Samples)

0 0.042 0.083 0.125 0.167
closely related moderately related distantly related
  1. 0.091 Unknown (RSP11645)
  2. 0.113 JL Cross 13 (RSP11514)
  3. 0.119 Pineapple Haze (RSP11646)
  4. 0.127 Girl Scout Cookies (RSP11653)
  5. 0.129 Alaska USA (RSP11171)
  6. 0.130 JL Cross 78 (RSP11579)
  7. 0.133 Girl Scout Cookies (RSP11650)
  8. 0.134 Master Kush (RSP11182)
  9. 0.134 JL Cross 77 (RSP11578)
  10. 0.136 Girl Scout Cookies (RSP11649)
  11. 0.136 UP Wendigo (RSP11261)
  12. 0.139 Girl Scout Cookies (RSP11651)
  13. 0.141 Electra (RSP11366)
  14. 0.141 JL Cross 80 (RSP11581)
  15. 0.142 Lift (RSP11378)
  16. 0.143 Domnesia (RSP11184)
  17. 0.144 Wedding Cake x MAC (RSP11464)
  18. 0.144 Calm (RSP11379)
  19. 0.144 Girl Scout Cookies (RSP11647)
  20. 0.144 UP Green Flash (RSP11259)

Most genetically distant strains (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.249 Feral (RSP11205)
  2. 0.239 CS (RSP11208)
  3. 0.236 Tiborszallasie (RSP11210)
  4. 0.235 Carmagnola USO 31 (RSP11204)
  5. 0.235 Fedora 17 (RSP11203)
  6. 0.233 Carmaleonte (RSP11207)
  7. 0.233 Feral (RSP11206)
  8. 0.222 Eletta Campana (RSP11209)
  9. 0.217 80E (RSP11212)
  10. 0.208 80E (RSP11213)
  11. 0.207 80E (RSP11211)
  12. 0.203 JL 4th Gen 6 (RSP11200)
  13. 0.200 Arcata Trainwreck (RSP11176)
  14. 0.199 JL 3rd Gen Father (RSP11196)
  15. 0.199 TI-7 (RSP11601)
  16. 0.198 Cbot-2019-005 (RSP11133)
  17. 0.197 Unknown- Cherry Wine - 001 (RSP11268)
  18. 0.194 Chematonic Cannatonic x Chemdawg (RSP11394)
  19. 0.194 Unknown- Cherry Wine - 004 (RSP11271)
  20. 0.193 Unknown- Cherry Wine - 002 (RSP11269)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346805
Overlapping SNPs:
85
Concordance:
63

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495246
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
d9cba682f4c357fd8ac5e8ad135930f9c3a907126070820598c46fae525423e9
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
1faa80abfa239682daa362a5e893cc22fc49cc674e842ee8daa221724d3686f7
QR code for RSP11648

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